Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1245
         (293 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117434-1|AAI17435.1|  154|Homo sapiens hypothetical protein FL...    29   3.6  
AK023417-1|BAB14570.1|  147|Homo sapiens protein ( Homo sapiens ...    29   3.6  
AK002154-1|BAA92112.1|  154|Homo sapiens protein ( Homo sapiens ...    29   3.6  
AY164485-1|AAO32798.1| 1732|Homo sapiens polycystic kidney disea...    28   6.2  
AF235828-1|AAK13958.1|   70|Homo sapiens immunoglobulin heavy ch...    27   8.2  
AB209479-1|BAD92716.1| 1653|Homo sapiens VARS2L protein variant ...    27   8.2  

>BC117434-1|AAI17435.1|  154|Homo sapiens hypothetical protein
           FLJ11292 protein.
          Length = 154

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 145 CNTTHYRANWVPGPPSRWVAA 83
           CN    R  WVP PP  WV++
Sbjct: 124 CNPQTRRFPWVPAPPGPWVSS 144


>AK023417-1|BAB14570.1|  147|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13355 fis, clone PLACE1000048. ).
          Length = 147

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 145 CNTTHYRANWVPGPPSRWVAA 83
           CN    R  WVP PP  WV++
Sbjct: 117 CNPQTRRFPWVPAPPGPWVSS 137


>AK002154-1|BAA92112.1|  154|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11292 fis, clone PLACE1009665. ).
          Length = 154

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 145 CNTTHYRANWVPGPPSRWVAA 83
           CN    R  WVP PP  WV++
Sbjct: 124 CNPQTRRFPWVPAPPGPWVSS 144


>AY164485-1|AAO32798.1| 1732|Homo sapiens polycystic kidney disease
           1-like 3 protein.
          Length = 1732

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = -2

Query: 274 KGDRCGPFAYYANWRKGDVLQGD*VG*RQGFPSHDVVKRRPVNCNTTHYRANWVPGP 104
           KGD+C    YY   + GD L GD    R G  SH   + +         R    PGP
Sbjct: 125 KGDKC-LLKYYFICQTGDFLDGDAHYERNGNNSHLYQRHKKTKRGVAIARDKMPPGP 180


>AF235828-1|AAK13958.1|   70|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 70

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +2

Query: 119 IRPIVSRITIHW 154
           +RPIV RITIHW
Sbjct: 57  LRPIVMRITIHW 68


>AB209479-1|BAD92716.1| 1653|Homo sapiens VARS2L protein variant
           protein.
          Length = 1653

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 126 GRIGYRAPPRGGWQH 82
           G  G RAP RGGW H
Sbjct: 367 GEAGQRAPGRGGWGH 381


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,909,849
Number of Sequences: 237096
Number of extensions: 1195695
Number of successful extensions: 9515
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9515
length of database: 76,859,062
effective HSP length: 74
effective length of database: 59,313,958
effective search space used: 1364221034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)