Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1245
         (293 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81484-2|CAB03970.2|  334|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z68108-5|CAD44152.2|  725|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AB275891-1|BAF34314.1|  334|Caenorhabditis elegans D-aspartate o...    26   4.1  
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    26   5.4  
Z81486-5|CAB03987.1|  570|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z47075-6|CAA87379.1|  538|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AF500111-1|AAM27196.1|  538|Caenorhabditis elegans poly ADP-ribo...    25   9.4  

>Z81484-2|CAB03970.2|  334|Caenorhabditis elegans Hypothetical
           protein C47A10.5 protein.
          Length = 334

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 113 YPIRPIVSRITIHWPSFYNVVTGKTLSLP 199
           YPIR +V  +  HW   +N     T ++P
Sbjct: 196 YPIRGVVLDVEAHWHKHFNYKDFITFTIP 224


>Z68108-5|CAD44152.2|  725|Caenorhabditis elegans Hypothetical
           protein T05A10.1b protein.
          Length = 725

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 172 RDWENPVVTQLNRLAAHPPFASWRNKRMARTDR 270
           ++WE  ++T  N  A  PPF S R  R+   D+
Sbjct: 674 KEWEQHMLTLQNLAAIIPPFVSERLYRIHTKDK 706


>AB275891-1|BAF34314.1|  334|Caenorhabditis elegans D-aspartate
           oxidase protein.
          Length = 334

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 113 YPIRPIVSRITIHWPSFYNVVTGKTLSLP 199
           YPIR +V  +  HW   +N     T ++P
Sbjct: 196 YPIRGVVLDVEAHWHKHFNYKDFITFTIP 224


>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
            protein R52.2 protein.
          Length = 1019

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 26   FMLA*VNEEAHSLPDVKW*CCHPPRGGARYPIRPIVSRITIHWPSFYNVVT 178
            F+   ++ E H      W   +P  G  RY + P   +I +H PS +NV++
Sbjct: 924  FLQLGLHHEDHDFCRFLWQPWNP--GTQRYQLTPQSPKIILHEPSTWNVLS 972


>Z81486-5|CAB03987.1|  570|Caenorhabditis elegans Hypothetical
           protein C53A5.6 protein.
          Length = 570

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 178 WENPVVTQLNRLAAHPPFASWRNKRMARTDRPYQQLHS 291
           W N   T  +  +  P   SWR++     DR Y  LHS
Sbjct: 479 WSNSSNTLRSVRSYDPLTKSWRDEPSLSKDRKYFTLHS 516


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 163  KRRPVNCNTTHYRANWVPGPPSRWVAALPFNIREAVS-FFIHLGKHEE 23
            + +P++ N   +     PGP  R   ++PF   E +S    ++G+H E
Sbjct: 2010 QEQPLSMNEISFLQPPEPGPQIRKFFSIPFIFEEYLSALLFYIGQHIE 2057


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 163  KRRPVNCNTTHYRANWVPGPPSRWVAALPFNIREAVS-FFIHLGKHEE 23
            + +P++ N   +     PGP  R   ++PF   E +S    ++G+H E
Sbjct: 2010 QEQPLSMNEISFLQPPEPGPQIRKFFSIPFIFEEYLSALLFYIGQHIE 2057


>Z47075-6|CAA87379.1|  538|Caenorhabditis elegans Hypothetical
           protein E02H1.4 protein.
          Length = 538

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 216 CKAIKLGNDRVFPVTTL*NDGQ*IVIRLTIGRIGYR 109
           CK     N+  F    L ++G   +++L  GRIGYR
Sbjct: 17  CKTNIAQNNNKFYDMELLDEGGDFIVKLINGRIGYR 52


>AF500111-1|AAM27196.1|  538|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-2 protein.
          Length = 538

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 216 CKAIKLGNDRVFPVTTL*NDGQ*IVIRLTIGRIGYR 109
           CK     N+  F    L ++G   +++L  GRIGYR
Sbjct: 17  CKTNIAQNNNKFYDMELLDEGGDFIVKLINGRIGYR 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,830,757
Number of Sequences: 27780
Number of extensions: 157159
Number of successful extensions: 319
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)