Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1245
(293 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g27020.1 68414.m03294 expressed protein 28 0.94
At2g26750.1 68415.m03208 epoxide hydrolase, putative strong simi... 27 2.9
At1g18720.1 68414.m02335 expressed protein similar to YGL010w-li... 27 2.9
At5g60140.1 68418.m07539 transcriptional factor B3 family protei... 26 3.8
At4g16140.1 68417.m02445 proline-rich family protein contains pr... 26 5.0
At2g37910.1 68415.m04653 cation/hydrogen exchanger, putative (CH... 26 5.0
At3g22845.1 68416.m02879 emp24/gp25L/p24 protein-related contain... 25 6.6
At1g27030.1 68414.m03295 expressed protein 25 6.6
At4g07825.1 68417.m01238 expressed protein this may be a pseudog... 25 8.7
At3g24740.1 68416.m03106 expressed protein 25 8.7
At2g02320.1 68415.m00170 F-box family protein / SKP1 interacting... 25 8.7
>At1g27020.1 68414.m03294 expressed protein
Length = 308
Score = 28.3 bits (60), Expect = 0.94
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 178 WENPVVTQLNRLAAHPPFASW 240
WE P T N+LA FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183
>At2g26750.1 68415.m03208 epoxide hydrolase, putative strong
similarity to ATsEH [Arabidopsis thaliana] GI:1109600
Length = 320
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 262 CGPFAYYANWRKGDVLQGD*VG*RQGFPSHDVV 164
CGP YY N+ + + L G VG + P+ V+
Sbjct: 228 CGPVNYYRNFNRNNELLGPWVGSKIQVPTKFVI 260
>At1g18720.1 68414.m02335 expressed protein similar to YGL010w-like
protein GI:2982301 from [Picea mariana]
Length = 206
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 284 NCW*GRSVRAIRLLRQLA-KGGCAARRLSW 198
+CW G S A+RL LA K G A++ L W
Sbjct: 102 SCWVGSSFLAVRLGSSLALKVGLASQLLCW 131
>At5g60140.1 68418.m07539 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 328
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 15 ISFSSCLPK*MKKLTASLMLNGN 83
ISF+SCLPK + K ++GN
Sbjct: 32 ISFNSCLPKSLPKTVTVRSISGN 54
>At4g16140.1 68417.m02445 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 164
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 92 PPRGGARYPIRPIVSRITIHWPSFY 166
PP+ G YP P + I ++P +Y
Sbjct: 105 PPKSGGNYPYTPPPNPIVPYFPFYY 129
>At2g37910.1 68415.m04653 cation/hydrogen exchanger, putative
(CHX21) and similar to hypothetical proteins;
monovalent cation:proton antiporter family 2 (CPA2)
member, PMID:11500563
Length = 232
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 164 YNVVTGKTLSLPNLIALQHIPLSP 235
+ ++T L LPN + H+PL P
Sbjct: 26 FQLLTASLLHLPNFVIRTHLPLFP 49
>At3g22845.1 68416.m02879 emp24/gp25L/p24 protein-related contains
weak similarity to transmembrane protein (GI:1212965)
[Homo sapiens]
Length = 214
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 79 PFNIREAVSFFIHLGKHEENE 17
P++ E VSF+IH+G H NE
Sbjct: 109 PYSTPETVSFYIHVG-HIPNE 128
>At1g27030.1 68414.m03295 expressed protein
Length = 310
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 178 WENPVVTQLNRLAAHPPFASW 240
WE P T +LA FA+W
Sbjct: 163 WEKPTWTDFKQLAKESEFAAW 183
>At4g07825.1 68417.m01238 expressed protein this may be a
pseudogene. A long ORF is frameshifted.
Length = 247
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 6 SPNISFSSCLPK*MKKL 56
SPN F SCLPK + L
Sbjct: 116 SPNAKFESCLPKISRSL 132
>At3g24740.1 68416.m03106 expressed protein
Length = 354
Score = 25.0 bits (52), Expect = 8.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 235 SWRNKRMARTDRPY 276
+WRN R + +DRPY
Sbjct: 289 AWRNHRRSSSDRPY 302
>At2g02320.1 68415.m00170 F-box family protein / SKP1 interacting
partner 3-related contains similarity to SKP1
interacting partner 3 GI:10716951 from [Arabidopsis
thaliana]
Length = 307
Score = 25.0 bits (52), Expect = 8.7
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = -2
Query: 139 TTHYRANWVPGPPSRWVAALP 77
+TH+ W+ P S W+ +P
Sbjct: 143 STHHTWKWITNPVSAWLETVP 163
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,530,457
Number of Sequences: 28952
Number of extensions: 151347
Number of successful extensions: 292
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 271185840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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