BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1245 (293 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g27020.1 68414.m03294 expressed protein 28 0.94 At2g26750.1 68415.m03208 epoxide hydrolase, putative strong simi... 27 2.9 At1g18720.1 68414.m02335 expressed protein similar to YGL010w-li... 27 2.9 At5g60140.1 68418.m07539 transcriptional factor B3 family protei... 26 3.8 At4g16140.1 68417.m02445 proline-rich family protein contains pr... 26 5.0 At2g37910.1 68415.m04653 cation/hydrogen exchanger, putative (CH... 26 5.0 At3g22845.1 68416.m02879 emp24/gp25L/p24 protein-related contain... 25 6.6 At1g27030.1 68414.m03295 expressed protein 25 6.6 At4g07825.1 68417.m01238 expressed protein this may be a pseudog... 25 8.7 At3g24740.1 68416.m03106 expressed protein 25 8.7 At2g02320.1 68415.m00170 F-box family protein / SKP1 interacting... 25 8.7 >At1g27020.1 68414.m03294 expressed protein Length = 308 Score = 28.3 bits (60), Expect = 0.94 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = +1 Query: 178 WENPVVTQLNRLAAHPPFASW 240 WE P T N+LA FA+W Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183 >At2g26750.1 68415.m03208 epoxide hydrolase, putative strong similarity to ATsEH [Arabidopsis thaliana] GI:1109600 Length = 320 Score = 26.6 bits (56), Expect = 2.9 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = -2 Query: 262 CGPFAYYANWRKGDVLQGD*VG*RQGFPSHDVV 164 CGP YY N+ + + L G VG + P+ V+ Sbjct: 228 CGPVNYYRNFNRNNELLGPWVGSKIQVPTKFVI 260 >At1g18720.1 68414.m02335 expressed protein similar to YGL010w-like protein GI:2982301 from [Picea mariana] Length = 206 Score = 26.6 bits (56), Expect = 2.9 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = -1 Query: 284 NCW*GRSVRAIRLLRQLA-KGGCAARRLSW 198 +CW G S A+RL LA K G A++ L W Sbjct: 102 SCWVGSSFLAVRLGSSLALKVGLASQLLCW 131 >At5g60140.1 68418.m07539 transcriptional factor B3 family protein contains Pfam profile PF02362: B3 DNA binding domain Length = 328 Score = 26.2 bits (55), Expect = 3.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 15 ISFSSCLPK*MKKLTASLMLNGN 83 ISF+SCLPK + K ++GN Sbjct: 32 ISFNSCLPKSLPKTVTVRSISGN 54 >At4g16140.1 68417.m02445 proline-rich family protein contains proline-rich extensin domains, INTERPRO:IPR002965 Length = 164 Score = 25.8 bits (54), Expect = 5.0 Identities = 9/25 (36%), Positives = 14/25 (56%) Frame = +2 Query: 92 PPRGGARYPIRPIVSRITIHWPSFY 166 PP+ G YP P + I ++P +Y Sbjct: 105 PPKSGGNYPYTPPPNPIVPYFPFYY 129 >At2g37910.1 68415.m04653 cation/hydrogen exchanger, putative (CHX21) and similar to hypothetical proteins; monovalent cation:proton antiporter family 2 (CPA2) member, PMID:11500563 Length = 232 Score = 25.8 bits (54), Expect = 5.0 Identities = 9/24 (37%), Positives = 14/24 (58%) Frame = +2 Query: 164 YNVVTGKTLSLPNLIALQHIPLSP 235 + ++T L LPN + H+PL P Sbjct: 26 FQLLTASLLHLPNFVIRTHLPLFP 49 >At3g22845.1 68416.m02879 emp24/gp25L/p24 protein-related contains weak similarity to transmembrane protein (GI:1212965) [Homo sapiens] Length = 214 Score = 25.4 bits (53), Expect = 6.6 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -2 Query: 79 PFNIREAVSFFIHLGKHEENE 17 P++ E VSF+IH+G H NE Sbjct: 109 PYSTPETVSFYIHVG-HIPNE 128 >At1g27030.1 68414.m03295 expressed protein Length = 310 Score = 25.4 bits (53), Expect = 6.6 Identities = 9/21 (42%), Positives = 11/21 (52%) Frame = +1 Query: 178 WENPVVTQLNRLAAHPPFASW 240 WE P T +LA FA+W Sbjct: 163 WEKPTWTDFKQLAKESEFAAW 183 >At4g07825.1 68417.m01238 expressed protein this may be a pseudogene. A long ORF is frameshifted. Length = 247 Score = 25.0 bits (52), Expect = 8.7 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = +3 Query: 6 SPNISFSSCLPK*MKKL 56 SPN F SCLPK + L Sbjct: 116 SPNAKFESCLPKISRSL 132 >At3g24740.1 68416.m03106 expressed protein Length = 354 Score = 25.0 bits (52), Expect = 8.7 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = +1 Query: 235 SWRNKRMARTDRPY 276 +WRN R + +DRPY Sbjct: 289 AWRNHRRSSSDRPY 302 >At2g02320.1 68415.m00170 F-box family protein / SKP1 interacting partner 3-related contains similarity to SKP1 interacting partner 3 GI:10716951 from [Arabidopsis thaliana] Length = 307 Score = 25.0 bits (52), Expect = 8.7 Identities = 7/21 (33%), Positives = 12/21 (57%) Frame = -2 Query: 139 TTHYRANWVPGPPSRWVAALP 77 +TH+ W+ P S W+ +P Sbjct: 143 STHHTWKWITNPVSAWLETVP 163 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,530,457 Number of Sequences: 28952 Number of extensions: 151347 Number of successful extensions: 292 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 290 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 292 length of database: 12,070,560 effective HSP length: 70 effective length of database: 10,043,920 effective search space used: 271185840 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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