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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1245
         (293 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27020.1 68414.m03294 expressed protein                             28   0.94 
At2g26750.1 68415.m03208 epoxide hydrolase, putative strong simi...    27   2.9  
At1g18720.1 68414.m02335 expressed protein similar to YGL010w-li...    27   2.9  
At5g60140.1 68418.m07539 transcriptional factor B3 family protei...    26   3.8  
At4g16140.1 68417.m02445 proline-rich family protein contains pr...    26   5.0  
At2g37910.1 68415.m04653 cation/hydrogen exchanger, putative (CH...    26   5.0  
At3g22845.1 68416.m02879 emp24/gp25L/p24 protein-related contain...    25   6.6  
At1g27030.1 68414.m03295 expressed protein                             25   6.6  
At4g07825.1 68417.m01238 expressed protein this may be a pseudog...    25   8.7  
At3g24740.1 68416.m03106 expressed protein                             25   8.7  
At2g02320.1 68415.m00170 F-box family protein / SKP1 interacting...    25   8.7  

>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 178 WENPVVTQLNRLAAHPPFASW 240
           WE P  T  N+LA    FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


>At2g26750.1 68415.m03208 epoxide hydrolase, putative strong
           similarity to ATsEH [Arabidopsis thaliana] GI:1109600
          Length = 320

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 262 CGPFAYYANWRKGDVLQGD*VG*RQGFPSHDVV 164
           CGP  YY N+ + + L G  VG +   P+  V+
Sbjct: 228 CGPVNYYRNFNRNNELLGPWVGSKIQVPTKFVI 260


>At1g18720.1 68414.m02335 expressed protein similar to YGL010w-like
           protein GI:2982301 from [Picea mariana]
          Length = 206

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 284 NCW*GRSVRAIRLLRQLA-KGGCAARRLSW 198
           +CW G S  A+RL   LA K G A++ L W
Sbjct: 102 SCWVGSSFLAVRLGSSLALKVGLASQLLCW 131


>At5g60140.1 68418.m07539 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 328

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 15  ISFSSCLPK*MKKLTASLMLNGN 83
           ISF+SCLPK + K      ++GN
Sbjct: 32  ISFNSCLPKSLPKTVTVRSISGN 54


>At4g16140.1 68417.m02445 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 164

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 92  PPRGGARYPIRPIVSRITIHWPSFY 166
           PP+ G  YP  P  + I  ++P +Y
Sbjct: 105 PPKSGGNYPYTPPPNPIVPYFPFYY 129


>At2g37910.1 68415.m04653 cation/hydrogen exchanger, putative
           (CHX21)  and similar to hypothetical proteins;
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 232

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 164 YNVVTGKTLSLPNLIALQHIPLSP 235
           + ++T   L LPN +   H+PL P
Sbjct: 26  FQLLTASLLHLPNFVIRTHLPLFP 49


>At3g22845.1 68416.m02879 emp24/gp25L/p24 protein-related contains
           weak similarity to transmembrane protein (GI:1212965)
           [Homo sapiens]
          Length = 214

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 79  PFNIREAVSFFIHLGKHEENE 17
           P++  E VSF+IH+G H  NE
Sbjct: 109 PYSTPETVSFYIHVG-HIPNE 128


>At1g27030.1 68414.m03295 expressed protein
          Length = 310

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 178 WENPVVTQLNRLAAHPPFASW 240
           WE P  T   +LA    FA+W
Sbjct: 163 WEKPTWTDFKQLAKESEFAAW 183


>At4g07825.1 68417.m01238 expressed protein this may be a
           pseudogene.  A  long ORF is frameshifted.
          Length = 247

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 6   SPNISFSSCLPK*MKKL 56
           SPN  F SCLPK  + L
Sbjct: 116 SPNAKFESCLPKISRSL 132


>At3g24740.1 68416.m03106 expressed protein
          Length = 354

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 235 SWRNKRMARTDRPY 276
           +WRN R + +DRPY
Sbjct: 289 AWRNHRRSSSDRPY 302


>At2g02320.1 68415.m00170 F-box family protein / SKP1 interacting
           partner 3-related contains similarity to SKP1
           interacting partner 3 GI:10716951 from [Arabidopsis
           thaliana]
          Length = 307

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 139 TTHYRANWVPGPPSRWVAALP 77
           +TH+   W+  P S W+  +P
Sbjct: 143 STHHTWKWITNPVSAWLETVP 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,530,457
Number of Sequences: 28952
Number of extensions: 151347
Number of successful extensions: 292
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 271185840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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