Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1242
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   3.4  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    24   5.9  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    24   5.9  
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom...    23   7.9  
SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subu...    23   7.9  

>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +1

Query: 1   PACTAVSCYIAPRPITVLCSPVQCDLASIIVS-PSAPYISLIWIK*LKSRVPAL*SWSGL 177
           P  TA S  I  RP  V+ S     L+S+ VS PS P    + +K + S+VP L  WS +
Sbjct: 28  PFQTASSLNIF-RPY-VIFSRSHRSLSSVDVSSPSLPLREHLPLKNVYSQVPLLPVWSPI 85

Query: 178 RASPTMDSRRQPF-TRLLPP 234
              P        F  RL PP
Sbjct: 86  PKGPRRFLLPPKFHYRLSPP 105


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 99  ECPVHIANLDKIIKIESPSTMKLE 170
           E PVH+ N +  +   +PST+K E
Sbjct: 275 EVPVHVYNTEGPVLKFNPSTVKFE 298


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 6/19 (31%), Positives = 15/19 (78%)
 Frame = +3

Query: 3   GLYCCQLLYRAASHHSVML 59
           G +C Q++YR ++++S ++
Sbjct: 580 GFHCLQMIYRESTYYSTIM 598


>SPBC32F12.02 |rec14||recombination protein
           Rec14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 117 ANLDKIIKIESPSTMKLEWTESESDYGLEEAAFYQASTAVA 239
           A+++  IKI    TM+   T+SE+D  +   A+Y+    VA
Sbjct: 247 ADVEGKIKIWDIDTMECISTQSETDGAIWAVAWYKNGFIVA 287


>SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subunit
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 137

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 135 IKIESPSTMKLEWTESESDY 194
           + IE+    K EWT+ E DY
Sbjct: 76  LSIENKILPKSEWTKPEEDY 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,214,186
Number of Sequences: 5004
Number of extensions: 20711
Number of successful extensions: 46
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)