Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1242
(309 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269 31 0.18
01_01_0348 + 2769295-2769660,2770082-2770192,2770284-2770358,277... 29 0.98
01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991... 28 1.3
11_05_0004 - 18269416-18269473,18270319-18270509,18271061-182720... 28 1.7
09_02_0356 + 7742926-7742937,7743008-7743040,7743704-7743758,774... 28 1.7
08_01_0070 + 490655-493165 28 1.7
08_02_1415 + 26912260-26913075,26913208-26913366,26913521-26913931 27 3.0
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 27 3.0
03_01_0488 + 3706416-3707948 27 3.0
09_02_0237 + 6141048-6141962 27 4.0
06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047 27 4.0
05_05_0236 - 23517512-23517682,23519436-23519516,23519685-235198... 26 5.2
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 26 5.2
02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019... 26 5.2
08_02_0393 + 16621137-16621139,16621392-16621583,16622559-166226... 26 6.9
02_02_0539 - 11315788-11315841,11316620-11316700,11316728-11317711 26 6.9
10_08_0620 - 19321612-19323237 25 9.2
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 25 9.2
09_03_0041 + 11826788-11828002,11828101-11828563,11828668-118287... 25 9.2
04_04_0455 - 25354071-25354128,25354129-25354307 25 9.2
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375... 25 9.2
>12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269
Length = 658
Score = 31.1 bits (67), Expect = 0.18
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -2
Query: 302 PPPSSHKSSLRLNRKHLPWRRRHGGRSLVKGC 207
P PS SS L+R H P RHG R L C
Sbjct: 63 PTPSPSSSSQSLDRHHPPPFARHGRRGLAAAC 94
>01_01_0348 +
2769295-2769660,2770082-2770192,2770284-2770358,
2770566-2770626,2770853-2770926,2771004-2771108,
2771475-2771582,2771681-2771784,2771939-2772088,
2772163-2772286,2772746-2772925
Length = 485
Score = 28.7 bits (61), Expect = 0.98
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 305 LPPPSSHKSSLRLNRKHLPWRRRHGGRSLVKGCLLESIVGL-ALSPLQLHSA 153
LP ++ RL LP RRHGGR + S+ GL +++ L LH+A
Sbjct: 11 LPSLQPRAAAARLPMLTLPSLRRHGGRRASACRVRASLHGLDSIAGLDLHAA 62
>01_01_1227 +
9912646-9913056,9913306-9913413,9913517-9913672,
9914110-9914325,9914436-9914645,9914722-9914859,
9915076-9915177,9915508-9915603
Length = 478
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 260 KHLPWRRRHGGRSLV-KGCLLESIVGLALSPLQLHSAG 150
K +P R +LV G L S+ GLA SPL +H+ G
Sbjct: 238 KWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFG 275
>11_05_0004 -
18269416-18269473,18270319-18270509,18271061-18272004,
18272083-18272254,18272332-18272407,18272498-18272617,
18272795-18272959,18273048-18273138,18273673-18273757,
18273873-18274043,18274151-18274207,18274290-18274385,
18275223-18275365,18275464-18275530
Length = 811
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 84 DNRFTECPVHIANLDKIIKIESP-STMKLEWTESESDYGLEEAAFYQASTAVAPPP 248
+ RFT V + + D ES ++K+ W E+ S E + +Q AV+PPP
Sbjct: 330 EQRFTGTIVGMGDSDPAGWPESKWRSLKVRWDEASSIPRPERVSPWQIEPAVSPPP 385
>09_02_0356 +
7742926-7742937,7743008-7743040,7743704-7743758,
7744137-7745530
Length = 497
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = -2
Query: 296 PSSHKSSLRLNRKHLPW----RRRHGGRSLVKGCLLESIVGLALSPLQ 165
P+ K R + + + W RRRH LV LL +IVGL LQ
Sbjct: 438 PTWEKMERRYSSRPVNWMALLRRRHLSNPLVATALLAAIVGLVCEVLQ 485
>08_01_0070 + 490655-493165
Length = 836
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 150 PSTMKL--EWTESESDYGLEEAAFYQASTAVAPP 245
PS + L EWT SD+GL A+ +S PP
Sbjct: 623 PSNILLDGEWTAKVSDFGLSLASSSSSSATATPP 656
>08_02_1415 + 26912260-26913075,26913208-26913366,26913521-26913931
Length = 461
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 31 APRPITVLCSPVQCDLASIIVSPSAPYISLIWI 129
AP+P PV C L II AP+++++ +
Sbjct: 401 APKPALCFSFPVPCKLNKIINMVHAPFLAILML 433
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 138 KIESPSTMKLEWTESESDYGLEEAAFYQASTAVAPP 245
K+ + S + W + + D + EA F ST APP
Sbjct: 463 KVRATSDRAMVWDQLKLDEDMIEALFMNNSTPAAPP 498
>03_01_0488 + 3706416-3707948
Length = 510
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 224 SLVKGCLLESIVGLALSPLQ-LHSAGTLDFNYFIQISDMYGALGET 90
+L+ C + +A +Q L S + Y+I +SDMY A G T
Sbjct: 433 ALLGACRTHGDINMAERAVQKLRSLNPEEGGYYILLSDMYAASGRT 478
>09_02_0237 + 6141048-6141962
Length = 304
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 43 ITVLCSPVQCDLASIIVSPSAPYISLIWIK*LKSRVPA 156
+T++ S V+C +S ++PSA S ++ K VPA
Sbjct: 98 MTLVASVVKCSCSSSAMAPSATTTSFLFCKICMDDVPA 135
>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
Length = 396
Score = 26.6 bits (56), Expect = 4.0
Identities = 22/66 (33%), Positives = 27/66 (40%)
Frame = -2
Query: 305 LPPPSSHKSSLRLNRKHLPWRRRHGGRSLVKGCLLESIVGLALSPLQLHSAGTLDFNYFI 126
LPPPS S + ++P RRRHG + C SP LDF Y I
Sbjct: 5 LPPPSQSVPSRPPSWLYIPPRRRHG--TFTSSCAFRLSPSSPSSP----PPPVLDFQY-I 57
Query: 125 QISDMY 108
Q D +
Sbjct: 58 QFMDSW 63
>05_05_0236 -
23517512-23517682,23519436-23519516,23519685-23519891,
23519987-23520164,23520250-23520284,23520725-23520826,
23520908-23520964,23521236-23521325
Length = 306
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 198 LEEAAFYQASTAVAPPPRKMFSV 266
L EAA Q ST +P PRK F V
Sbjct: 41 LLEAARLQKSTRASPKPRKKFEV 63
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 75 SRFDNRFTECPVHIANLDKIIKIES 149
S+F+NR EC + L+++I+I++
Sbjct: 421 SKFENRLEECSRMVGELEQLIQIKN 445
>02_02_0574 -
11701359-11701460,11701469-11701570,11701725-11701922,
11702090-11704052,11705312-11706126
Length = 1059
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 209 CLLE-SIVGLALSPLQLHSAGTLDFNYFIQISDMYGA 102
CL E S+VG++ SP L G+L +QIS+ GA
Sbjct: 664 CLQEISLVGISKSPNFLKELGSLTELRILQISESTGA 700
>08_02_0393 +
16621137-16621139,16621392-16621583,16622559-16622612,
16623041-16623160,16623280-16623501,16623594-16623650,
16623993-16624046,16624395-16624426,16624888-16625023,
16625108-16625278,16625430-16625661,16626018-16626022
Length = 425
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 12 CCQLLYRAASHHSVMLASSV*SRFDNRFTE 101
CC + ++SH S++L+ S + FD++ E
Sbjct: 264 CCDITTSSSSHVSLLLSGSPQTCFDDKLLE 293
>02_02_0539 - 11315788-11315841,11316620-11316700,11316728-11317711
Length = 372
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 168 EWTESESDYGLEEAAFYQASTAVAPPPRK 254
E ES+SD G + A Y A P PR+
Sbjct: 140 ETAESDSDVGEQMAVVYMAVPLFIPKPRR 168
>10_08_0620 - 19321612-19323237
Length = 541
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 4 ACTAVSCYIAPRPITVLCSPVQCDLASIIVSPSAPYI 114
A TA++ + + T+L SP+ D A +V P+ PY+
Sbjct: 165 ASTALNSKVVSQYSTLL-SPLAVDAALAVVDPAHPYL 200
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 138 KIESPSTMKLEWTESESDYGLEEAAFYQASTAVAP 242
K+ + S + W + D + E F STAVAP
Sbjct: 423 KVRTSSDRDMVWDRLKLDEDMIEVLFMNNSTAVAP 457
>09_03_0041 +
11826788-11828002,11828101-11828563,11828668-11828798,
11829227-11829577,11829723-11829879,11829968-11830260,
11830367-11830426,11830530-11830619,11830774-11830857
Length = 947
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 257 HLPWRRRHGGRSLVKGCLLESIVGLALSPLQLHSAGTL 144
HL W+ R + LVKG + +A+S L+ S G L
Sbjct: 786 HLHWKHRELVKVLVKGKSFPQVKHIAIS-LEAESGGVL 822
>04_04_0455 - 25354071-25354128,25354129-25354307
Length = 78
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 302 PPPSSHKSSLRLNRKHLPW 246
PPP++ K+ + + HLPW
Sbjct: 18 PPPAALKNHVHVQAIHLPW 36
>02_05_0008 +
24934917-24935229,24936387-24936608,24936876-24937591,
24937646-24937728,24938448-24938514,24938833-24939228,
24939276-24939318,24939380-24939474,24940287-24940314,
24940636-24940754
Length = 693
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 296 PSSHKSSLRLNRKHLPWR 243
P +H+ SL N KH PW+
Sbjct: 305 PFTHEKSLLGNLKHYPWK 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,022,810
Number of Sequences: 37544
Number of extensions: 167471
Number of successful extensions: 499
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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