Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1242
         (309 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46967| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-19)                 30   0.33 
SB_159| Best HMM Match : TP2 (HMM E-Value=0.58)                        28   1.8  
SB_54921| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)                      27   3.1  
SB_19949| Best HMM Match : DiS_P_DiS (HMM E-Value=7.9)                 27   3.1  
SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_56576| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_36730| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  

>SB_46967| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-19)
          Length = 341

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 21/77 (27%), Positives = 32/77 (41%)
 Frame = +3

Query: 3   GLYCCQLLYRAASHHSVMLASSV*SRFDNRFTECPVHIANLDKIIKIESPSTMKLEWTES 182
           GL    L+     HH V LA  + SRF    T   + +  L++ I I      KL  T+ 
Sbjct: 85  GLLAIPLIVTCNIHHKVCLAMDITSRFIAYSTVLHLLVVTLERYIMIVHAMKYKLWITKK 144

Query: 183 ESDYGLEEAAFYQASTA 233
            +   L     + A+T+
Sbjct: 145 RTSIVLTSVWVFSAATS 161


>SB_159| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 136 LKSRVPAL*SWSGLRASPTMDSRRQPFTRL-LPP 234
           +KS    + S+SG+  SP   SRR+P  RL LPP
Sbjct: 191 IKSAPVDIPSFSGMAKSPETASRREPRQRLKLPP 224


>SB_54921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 179 ERVRLWTRGGSLLPGFYRRGASSKEDVFCSV 271
           E ++ W  G +  P   RRG  +K+ VFC +
Sbjct: 149 EMMQDWVDGNTNTPELIRRGEKTKKAVFCLI 179


>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 163 SWSGLRASPTMDSRRQPFTRL-LPP 234
           S+SG+  SP   SRR+P  RL LPP
Sbjct: 200 SFSGMAKSPETASRREPRQRLKLPP 224


>SB_19949| Best HMM Match : DiS_P_DiS (HMM E-Value=7.9)
          Length = 353

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 4   ACTAVSCYIAPRPITVLCSPVQCDLASIIVSPSAPYISLIW 126
           +C  +S Y+  RP   LCS     L S +V P   Y S +W
Sbjct: 198 SCGPLSRYVLLRPFIPLCS--LAALYSSLVQPHFDYCSPLW 236


>SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = +3

Query: 132 IIKIESPSTMKLEWTESESDYGLEEAAFY-----QASTAVAPPPRKMFS 263
           +I +  PST +L      +  GL++ +FY     QAS   + PP ++FS
Sbjct: 381 VIDLCDPSTSELPLKSQGAPKGLDQTSFYSACKSQASYPHSTPPLQVFS 429


>SB_56576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +3

Query: 90  RFTECPVHIANLDKIIKI----ESPSTMKLEWTESESDYGLEEAAFYQASTAVA 239
           RFTE  +   N    I       SPST K +       +G+E AA YQ S +VA
Sbjct: 214 RFTEAVIDTGNFIGFITFTVSHNSPSTQKFQVYA----FGIETAANYQVSESVA 263


>SB_36730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = +1

Query: 55  CSPVQCDLASIIVSPSAPYISLIWIK*LKSRVPAL*SWSGLRASPTMDSRRQPFTRLLPP 234
           C+PV     S     S P   ++ +  LK  +  L +W  +R    +  +R P+   + P
Sbjct: 20  CTPVTLPFISCTPVHSPPNAIVLTLTFLKKSLVYL-TW--IRTLARLLEKRSPYHGAITP 76

Query: 235 WRLLQGRCFLFSLRL 279
               QG+  L+ +RL
Sbjct: 77  LSRYQGKTTLYLIRL 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,608,885
Number of Sequences: 59808
Number of extensions: 164980
Number of successful extensions: 389
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)