Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1242
         (309 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2932|AAS64974.1|  884|Drosophila melanogaster CG6292-PA...    27   3.6  
AE014296-2931|AAF49325.1| 1097|Drosophila melanogaster CG6292-PB...    27   3.6  
X85331-1|CAA59680.1|  437|Drosophila melanogaster msh protein.         27   4.7  
AE014298-2299|AAS65376.1|  783|Drosophila melanogaster CG9163-PB...    26   8.2  
AE014298-2298|AAF48548.3|  840|Drosophila melanogaster CG9163-PA...    26   8.2  

>AE014296-2932|AAS64974.1|  884|Drosophila melanogaster CG6292-PA,
           isoform A protein.
          Length = 884

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 166 WSGLRASPTMDSRRQPFTRLLPP 234
           W  ++  P   S+ QPF  LLPP
Sbjct: 411 WPDIKKEPMSQSQPQPFNGLLPP 433


>AE014296-2931|AAF49325.1| 1097|Drosophila melanogaster CG6292-PB,
           isoform B protein.
          Length = 1097

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 166 WSGLRASPTMDSRRQPFTRLLPP 234
           W  ++  P   S+ QPF  LLPP
Sbjct: 624 WPDIKKEPMSQSQPQPFNGLLPP 646


>X85331-1|CAA59680.1|  437|Drosophila melanogaster msh protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 302 PPPSSHKSSLRLNRKHLPWRRRHGGRSLVKG 210
           PPP+  + S   +R+HLP RRR   R L  G
Sbjct: 103 PPPAVGRPS---SRQHLPSRRRRAPRPLAAG 130


>AE014298-2299|AAS65376.1|  783|Drosophila melanogaster CG9163-PB,
           isoform B protein.
          Length = 783

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -2

Query: 308 ALPPPSSHKSSLRLNRKHLPWRRRHGGRSLVKGCLLESIVG 186
           ALP P   ++++++ +K  P+   HG  ++    +L S+VG
Sbjct: 714 ALPTP---ENTIKMEKKETPYENYHGSNTVFLVGVLMSVVG 751


>AE014298-2298|AAF48548.3|  840|Drosophila melanogaster CG9163-PA,
           isoform A protein.
          Length = 840

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -2

Query: 308 ALPPPSSHKSSLRLNRKHLPWRRRHGGRSLVKGCLLESIVG 186
           ALP P   ++++++ +K  P+   HG  ++    +L S+VG
Sbjct: 714 ALPTP---ENTIKMEKKETPYENYHGSNTVFLVGVLMSVVG 751


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,224,941
Number of Sequences: 53049
Number of extensions: 248792
Number of successful extensions: 597
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 589756776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)