Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1242
(309 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF149288-1|AAF99087.1| 644|Caenorhabditis elegans KRP85 protein. 29 0.50
AC024801-1|AAK68513.1| 646|Caenorhabditis elegans Kinesin-like ... 29 0.50
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 29 0.87
U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily ass... 29 0.87
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass... 29 0.87
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 27 3.5
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 27 3.5
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 26 6.2
U23516-2|AAG38882.1| 507|Caenorhabditis elegans Hypothetical pr... 26 6.2
U23516-1|AAL11101.1| 464|Caenorhabditis elegans Hypothetical pr... 26 6.2
>AF149288-1|AAF99087.1| 644|Caenorhabditis elegans KRP85 protein.
Length = 644
Score = 29.5 bits (63), Expect = 0.50
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +3
Query: 99 ECPVHIANLDKIIKIESPSTMK--LEWTESESDYGLEEAAFY-QASTAVAPPPRKMFS 263
E ++IA +D+ I +E ++ + W+E D+ L+ A+ A APP +K FS
Sbjct: 544 ELLLNIAIIDEYIPVEHVELIEKYVSWSEEHGDWQLKAIAYTGNNMRASAPPAKKEFS 601
>AC024801-1|AAK68513.1| 646|Caenorhabditis elegans Kinesin-like
protein protein 20 protein.
Length = 646
Score = 29.5 bits (63), Expect = 0.50
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +3
Query: 99 ECPVHIANLDKIIKIESPSTMK--LEWTESESDYGLEEAAFY-QASTAVAPPPRKMFS 263
E ++IA +D+ I +E ++ + W+E D+ L+ A+ A APP +K FS
Sbjct: 546 ELLLNIAIIDEYIPVEHVELIEKYVSWSEEHGDWQLKAIAYTGNNMRASAPPAKKEFS 603
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
F55H12.3 protein.
Length = 2972
Score = 28.7 bits (61), Expect = 0.87
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 187 PTMDSRRQPFTRLLPPWRLLQG 252
PT+DS P +LPPW ++G
Sbjct: 2086 PTIDSNPSPADEILPPWLSIRG 2107
>U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform a protein.
Length = 1004
Score = 28.7 bits (61), Expect = 0.87
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 213 FYQASTAVAPPPRKMFSVQS 272
++Q+S VAPPPR+ +S +S
Sbjct: 645 YHQSSDPVAPPPRRYYSTES 664
>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform c protein.
Length = 1099
Score = 28.7 bits (61), Expect = 0.87
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 213 FYQASTAVAPPPRKMFSVQS 272
++Q+S VAPPPR+ +S +S
Sbjct: 740 YHQSSDPVAPPPRRYYSTES 759
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 1 PACTAVSCYIAPRPITVLCSPVQC 72
PAC SC +AP P+TV C P QC
Sbjct: 134 PACEQ-SC-VAPAPVTVQCVP-QC 154
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 1 PACTAVSCYIAPRPITVLCSPVQC 72
PAC SC +AP P+TV C P QC
Sbjct: 135 PACEQ-SC-VAPAPVTVQCVP-QC 155
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 4 ACTAVSCYIAPRPITVLCSP---VQCDLASIIVSPSA 105
+C SCY P V C P C+ + ++ +P+A
Sbjct: 112 SCQTSSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAA 148
>U23516-2|AAG38882.1| 507|Caenorhabditis elegans Hypothetical
protein B0416.5a protein.
Length = 507
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -2
Query: 236 HGGRSLVKG--CLLESIVGLALSPLQLHSAGTLDF 138
H G S++ G CLL ++GLA P+ L A F
Sbjct: 349 HQGYSVILGVTCLLFGVLGLATYPIGLELASECTF 383
>U23516-1|AAL11101.1| 464|Caenorhabditis elegans Hypothetical
protein B0416.5b protein.
Length = 464
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -2
Query: 236 HGGRSLVKG--CLLESIVGLALSPLQLHSAGTLDF 138
H G S++ G CLL ++GLA P+ L A F
Sbjct: 306 HQGYSVILGVTCLLFGVLGLATYPIGLELASECTF 340
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,893,588
Number of Sequences: 27780
Number of extensions: 117958
Number of successful extensions: 382
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -