Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1242
         (309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   0.21 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    23   1.1  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   1.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   1.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   1.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   2.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   3.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   4.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   4.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   4.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   7.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   7.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   7.8  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 25.0 bits (52), Expect = 0.21
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 200 ESIVGLALSPLQLHSAGTLDFN 135
           + I G+ALSP+ +H   TL F+
Sbjct: 373 DGIFGMALSPVDIHDDRTLFFH 394


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = +3

Query: 126 DKIIKIESPSTMKLEWTESESDYGLEEAAFYQASTAVAPPPR 251
           D ++++ S       WT    +  +E     +A  A+ PP R
Sbjct: 126 DNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTR 167


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = +3

Query: 126 DKIIKIESPSTMKLEWTESESDYGLEEAAFYQASTAVAPPPR 251
           D ++++ S       WT    +  +E     +A  A+ PP R
Sbjct: 142 DNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTR 183


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = +3

Query: 126 DKIIKIESPSTMKLEWTESESDYGLEEAAFYQASTAVAPPPR 251
           D ++++ S       WT    +  +E     +A  A+ PP R
Sbjct: 199 DNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTR 240


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 187 PTMDSRRQPFTRLLPPWRLLQGR 255
           P    RRQPF+  +P  R +  R
Sbjct: 73  PMQLGRRQPFSLFIPAHRKIAAR 95


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 299 PPSSHKSSLRLNRKHLPW 246
           PP+ +KSS  +N ++ P+
Sbjct: 150 PPAIYKSSCEINVEYFPF 167


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic
          acetylcholine receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 10 TAVSCYIAPRP 42
          TA+SC +AP P
Sbjct: 3  TAISCLVAPFP 13


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +1

Query: 37  RPITVLCSPVQCDLASIIVSPSAPYISLIW 126
           R + ++ +   C+   +IVSP+      IW
Sbjct: 261 RSVDLVVTSTYCEPQVVIVSPTRELTIQIW 290


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 141 IESPSTMKLEWTESES-DYGLEEAAFY-QASTAVAPPPRK 254
           ++  S+ KL+ + ++S +  L  A  Y Q  T V+PPP K
Sbjct: 869 LQEVSSDKLQESSTDSRNPALALAEPYNQRGTVVSPPPTK 908


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 141  IESPSTMKLEWTESES-DYGLEEAAFY-QASTAVAPPPRK 254
            ++  S+ KL+ + ++S +  L  A  Y Q  T V+PPP K
Sbjct: 907  LQEVSSDKLQESSTDSRNPALALAEPYNQRGTVVSPPPTK 946


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 6/24 (25%), Positives = 14/24 (58%)
 Frame = +3

Query: 108 VHIANLDKIIKIESPSTMKLEWTE 179
           +   +L  ++ +++    KLEWT+
Sbjct: 7   IFFLSLVSVVLLDTTQEEKLEWTK 30


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 290 SHKSSLRLNRKHLPWRRRHGGRSLVKGCLLESIVGLALSPLQ 165
           S + S RLN   LP+ R    +++V G  L     +A  P++
Sbjct: 479 SAEHSARLNVYGLPFIRHMDKKAIVAGETLRVTCPVAGYPIE 520


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 18  QLLYRAASHHSVMLASSV*SRFDNRFTECPV 110
           Q+ YR A   S  L   V + FD     C V
Sbjct: 39  QVCYRGAPQDSENLLGRVLAEFDGTTVLCRV 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,360
Number of Sequences: 438
Number of extensions: 1511
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)