Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1242
         (309 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61080.1 68414.m06877 proline-rich family protein                   28   1.1  
At4g23060.1 68417.m03325 calmodulin-binding family protein conta...    27   2.6  
At4g30150.1 68417.m04287 expressed protein                             27   3.4  
At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein...    26   4.5  
At3g18280.1 68416.m02325 protease inhibitor/seed storage/lipid t...    26   4.5  
At1g10410.1 68414.m01173 expressed protein similar to ESTs gb|N9...    26   4.5  
At5g15680.1 68418.m01834 expressed protein                             25   7.8  
At4g29750.1 68417.m04237 expressed protein contains Pfam domain,...    25   7.8  
At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4...    25   7.8  
At2g34970.1 68415.m04291 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    25   7.8  
At2g18150.1 68415.m02112 peroxidase, putative peroxidase [Arabid...    25   7.8  

>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 96  TECPVHIANLDKIIKIESPSTMKLEWTESESDYGLEEAAFYQASTAVAPPP 248
           TE  V++     ++  E  + MK+   ES S+  L  +  Y+ S+ + PPP
Sbjct: 368 TEESVNLDEESVVLNGEQDTIMKISSLESTSESKLNHSEKYENSSQLFPPP 418


>At4g23060.1 68417.m03325 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 543

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -2

Query: 302 PPPSSHKSSLRLNRKHLPWRRRHGGRSLVKGCLLESIVGLALSPLQLHSA 153
           PPPS H+SS R  RK  P     G     K  +  +    A++   + +A
Sbjct: 70  PPPSHHQSSPRRRRKQKPMWEDEGSEDSDKHAIAVAAATAAVAEAAVAAA 119


>At4g30150.1 68417.m04287 expressed protein
          Length = 2009

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 12   CCQLLYRAASHHSVMLASSV 71
            CC+LLY A  HH      S+
Sbjct: 1855 CCRLLYTAVKHHKSQTEGSI 1874


>At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein 1
           (SOL1) identical to CXC domain containing TSO1-like
           protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427;
           contains Pfam profile PF03638: Tesmin/TSO1-like CXC
           domain; supporting cDNA
           gi|7767426|gb|AF205142.1|AF205142
          Length = 609

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 305 LPPPSSHKSSLRLNR-KHLPWRRRHGGRSLVK 213
           L P S   S   L+  +  PWRR  GGR+L++
Sbjct: 566 LSPNSKRVSLSHLDSPESTPWRRNGGGRNLIR 597


>At3g18280.1 68416.m02325 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to TED4
           [Zinnia elegans] GI:493721; contains Pfam protease
           inhibitor/seed storage/LTP family domain PF00234
          Length = 96

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 28  IAPRPITVLCSPVQCDLASIIVSPSAPYISLIWIK*LKSRVPAL 159
           +AP    V CSP+Q    +  ++ S+P  +L   K LK + P L
Sbjct: 22  LAPAAEAVTCSPMQLSPCATAITSSSPPSALCCAK-LKEQRPCL 64


>At1g10410.1 68414.m01173 expressed protein similar to ESTs
           gb|N96021 and gb|N96863
          Length = 485

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2

Query: 302 PPPSSHKSSLRLNRKHLPWRRRHGGRSL 219
           PP S  KSSLRL+ K   WR  H   +L
Sbjct: 179 PPSSRKKSSLRLSYK---WREGHASGAL 203


>At5g15680.1 68418.m01834 expressed protein 
          Length = 2151

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 165 LEWTESESDYGLEEAAFYQASTAV 236
           L W ESES  G  +A+ +Q   AV
Sbjct: 67  LRWRESESPKGANDASTFQRKLAV 90


>At4g29750.1 68417.m04237 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 776

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 269 LNRKHLPWRRRHGGRSLVKGCLLESIVGLALSPLQLHSAGTL 144
           +   HL W+ R   + +V+G  L  +  +A+S L+  S G L
Sbjct: 636 IENMHLHWKHRELVKVIVRGKSLPQVKHIAIS-LEAESGGVL 676


>At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4)
           identical to AtMRP4 GI:2959767 from [Arabidopsis
           thaliana]
          Length = 1516

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -2

Query: 245 RRRHGGRSLVKGCLLESIVGLALSPLQLHSAGTLDFNYFIQISDMYGALGETIIEA 78
           R+ HG   +V    +++   L+   LQLH+   +     + +  +YG+LG ++I A
Sbjct: 416 RQNHGVGQIVNYMAVDA-QQLSDMMLQLHAIWLMPLQVTVALVLLYGSLGASVITA 470


>At2g34970.1 68415.m04291 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein similar to SP|Q64350
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Rattus norvegicus};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 730

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 239 RHGGRSLVKGCLLESIVGLALSPLQLHS--AGTLD 141
           +H  R  VKG L++ I+G  +   ++HS  AG +D
Sbjct: 256 QHLRRHFVKGVLVDDIMGYKIFTHEIHSSYAGRID 290


>At2g18150.1 68415.m02112 peroxidase, putative peroxidase
           [Arabidopsis thaliana] gi|6822093|emb|CAB71009;
           identical to cDNA class III peroxidase ATP36 pseudogene,
           GI:17530548; contains Pfam profile PF00141: Peroxidase
          Length = 338

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 206 GSLLPGFYRRGASSKEDVFCSVL 274
           G+L PGFYR      E++  SV+
Sbjct: 34  GNLFPGFYRSSCPRAEEIVRSVV 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,645,156
Number of Sequences: 28952
Number of extensions: 116046
Number of successful extensions: 332
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)