Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1241
         (305 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O96253 Cluster: Putative uncharacterized protein PFB080...    33   1.7  
UniRef50_Q9AIZ4 Cluster: Alkyl hydroperoxide reductase small sub...    32   2.2  
UniRef50_Q06J17 Cluster: DNA-directed RNA polymerase subunit bet...    32   2.9  
UniRef50_Q897H1 Cluster: Membrane-associated protein; n=1; Clost...    31   5.0  
UniRef50_Q01ZH1 Cluster: Putative uncharacterized protein precur...    31   6.7  
UniRef50_A3U7C3 Cluster: Phenylacetic acid degradation protein; ...    30   8.8  

>UniRef50_O96253 Cluster: Putative uncharacterized protein PFB0800c;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein PFB0800c - Plasmodium falciparum
            (isolate 3D7)
          Length = 1817

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 148  YYSTKKCFYLEINVQNIPFVSSL 216
            YY+  KCFY +IN++NI F + +
Sbjct: 1473 YYNISKCFYYKINIENIHFKNKI 1495


>UniRef50_Q9AIZ4 Cluster: Alkyl hydroperoxide reductase small
           subunit; n=6; Candidatus Carsonella ruddii|Rep: Alkyl
           hydroperoxide reductase small subunit - Carsonella
           ruddii
          Length = 177

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 145 AYYSTKKCFYLEINVQNIPFVSSLSKLISQNF-IYSYK 255
           ++Y+ KK    E+   N P +S  +KLIS+NF IY+ K
Sbjct: 73  SHYTHKKWIDEELTFVNFPLISDFNKLISKNFNIYNKK 110


>UniRef50_Q06J17 Cluster: DNA-directed RNA polymerase subunit beta;
            n=1; Bigelowiella natans|Rep: DNA-directed RNA polymerase
            subunit beta - Bigelowiella natans (Pedinomonas
            minutissima) (Chlorarachnion sp.(strain CCMP 621))
          Length = 1099

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 166  CFYLEINVQNIPFVSSLSKLISQNFIYS 249
            CFYL+   + IPF  S    +S+NFIYS
Sbjct: 919  CFYLQRRFKVIPFDESFGFEVSRNFIYS 946


>UniRef50_Q897H1 Cluster: Membrane-associated protein; n=1;
           Clostridium tetani|Rep: Membrane-associated protein -
           Clostridium tetani
          Length = 504

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -2

Query: 166 IFLSSNKQIEITISFNLCFTNIFN*NIFKLPKK*INSKIILTSHLLLKVYFFYTF 2
           I L + K  E+ +S    +  +F  +I K+ K+ IN  I+L  HLL+ ++    F
Sbjct: 21  IHLKNKKLKELKVSSTKLWEKVFE-DISKVKKRKINKYILLVLHLLIGIFIICAF 74


>UniRef50_Q01ZH1 Cluster: Putative uncharacterized protein precursor;
            n=1; Solibacter usitatus Ellin6076|Rep: Putative
            uncharacterized protein precursor - Solibacter usitatus
            (strain Ellin6076)
          Length = 1161

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = -2

Query: 205  QRGCSVHLFPNKNIFLSSNKQIEITISFNLCFT----NIFN*NIFKLPKK*INS 56
            ++  +V +FPNKN  +S  K   +T  F + F     N+FN  +F  P+  +NS
Sbjct: 1084 RKNSTVRVFPNKNENVSLAKTFSVTERFRIDFRAEAFNVFNRVVFGGPQTSLNS 1137


>UniRef50_A3U7C3 Cluster: Phenylacetic acid degradation protein;
           putative transferase; n=5; Bacteria|Rep: Phenylacetic
           acid degradation protein; putative transferase -
           Croceibacter atlanticus HTCC2559
          Length = 204

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 214 VKIQRGCSVHLFPNKNIFLSSNKQI 140
           V +Q  C+VH+FP K+I L +   +
Sbjct: 55  VNVQENCTVHMFPGKSIVLKAGAHV 79


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,945,492
Number of Sequences: 1657284
Number of extensions: 4379038
Number of successful extensions: 10204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10201
length of database: 575,637,011
effective HSP length: 78
effective length of database: 446,368,859
effective search space used: 10266483757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)