Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1241
         (305 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   0.72 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   2.9  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   2.9  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    20   6.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 0.72
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 52  IILTSHLLLKVYFFY 8
           II T H LL  Y+FY
Sbjct: 90  IIFTVHFLLCTYYFY 104


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 181 INVQNIPFVSSLSK 222
           INV  +PFV S+ K
Sbjct: 506 INVYGLPFVRSMEK 519


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 148 YYSTKKCFYLEINVQNIPFVSSLSKLI 228
           Y  TKKC++L + + ++  V  + K I
Sbjct: 49  YNFTKKCYFLRMVLIDLLIVGCILKHI 75


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 60  FIYFLGNLKMF*LKMFVKHKLKLIVISICLLLDKKMFLF 176
           F+Y +     F ++MF+ +   L VI I +   K+   F
Sbjct: 264 FLYTINGQGQFNIEMFLCNMSLLTVIPIHVWTSKEKISF 302


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,890
Number of Sequences: 336
Number of extensions: 1436
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5518292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)