Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1241
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   0.47 
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   1.9  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      24   5.8  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    24   5.8  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    24   5.8  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    24   5.8  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    23   7.7  

>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 27.5 bits (58), Expect = 0.47
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 136 FLFAYYSTKKCFYLEINVQNIPFVSSLSKLISQNFI 243
           FLF   S +  F L +  +NIP +  + K++++  I
Sbjct: 165 FLFKASSLRNGFLLALKQRNIPVIRQVGKIVTERLI 200


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -2

Query: 181  FPNKNIFLSSNKQIEITISFNLCFTNIFN*NIFKLPKK*INSKIILTSHLLLKVYFF 11
            FPN++   SSN    +  SF+   + +F+ N+ +L KK +N   I    ++  V  F
Sbjct: 1203 FPNESNACSSNVLEHVASSFSKWHSKVFSRNL-RLLKKYLNDVSICWEQIVYLVQDF 1258


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 303 FFFFFNVSYPYLESVCFIAINKIL 232
           FF+++  S+ YL+SV  +    +L
Sbjct: 271 FFYYYGFSFNYLDSVVSVRSGTVL 294


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 169 FYLEINVQNIPFVSSLSKLISQNFIYSY 252
           FY  INV ++  +++ S   ++ F+Y+Y
Sbjct: 250 FYWSINVGSLSVLATTSLESTKGFVYAY 277


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 114  HKLKLIVISICLLLDKKMFLFGNKCTEH-PLCI 209
            H  + ++++  L L K M L  N C EH PL I
Sbjct: 934  HNNQSLLLAASLTLSKFMCLSNNFCMEHLPLLI 966


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 197 SPLYLHFPNLYLRIL 241
           +PLY HF N Y+R L
Sbjct: 132 APLYNHFDNFYVRRL 146


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = -2

Query: 208 IQRGCSVHLFPNKNIFLSSNKQIEITISFNLCFTNIFN*NIFKLPKK*INSKIILTSHLL 29
           I  G SV L P+   FLSSN    +    ++C++ IF+ ++  L  + ++   +L S  L
Sbjct: 622 ILSGSSVDL-PSAE-FLSSNLTDALYSGSSICYSLIFSHSLLDLTFQYVDIASLL-SQFL 678

Query: 28  LKVY 17
           L VY
Sbjct: 679 LCVY 682


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,183,490
Number of Sequences: 5004
Number of extensions: 21991
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)