Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1241
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83105-9|CAB05489.1|  199|Caenorhabditis elegans Hypothetical pr...    27   2.6  
Z68337-3|CAA92750.2|  712|Caenorhabditis elegans Hypothetical pr...    27   2.6  
U97009-8|AAC69032.1|  534|Caenorhabditis elegans Udp-glucuronosy...    26   6.0  
U40942-6|AAP68937.1|  709|Caenorhabditis elegans High temperatur...    26   6.0  
U40942-5|AAC47068.1|  729|Caenorhabditis elegans High temperatur...    26   6.0  
AY070228-1|AAL55425.1|  729|Caenorhabditis elegans HID-1 protein.      26   6.0  
AF078783-4|AAC26919.2|   87|Caenorhabditis elegans Hypothetical ...    26   6.0  
Z82287-2|CAB05312.1|  502|Caenorhabditis elegans Hypothetical pr...    25   7.9  

>Z83105-9|CAB05489.1|  199|Caenorhabditis elegans Hypothetical
           protein F14H3.9 protein.
          Length = 199

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 181 INVQNIPFVSSLSKLISQNF-IYSYK 255
           I ++  PF++ LSKL S NF I+ YK
Sbjct: 110 IYLKQTPFIACLSKLRSSNFNIFKYK 135


>Z68337-3|CAA92750.2|  712|Caenorhabditis elegans Hypothetical
           protein M7.3 protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 223 VWKVKIQRGCSVHLFPNKNIFLSSNKQIEITIS 125
           + KV     C +H FP+ N +  SNK  +++IS
Sbjct: 126 IQKVMKMTSCHIH-FPDSNKYSDSNKSDQVSIS 157


>U97009-8|AAC69032.1|  534|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein12 protein.
          Length = 534

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 104 VCEAQIKANSNFYLLITRQKNVFIWK*MYRTSPLYLHFPNLYL 232
           + + Q+    N+++     + V  WK + + SP+Y+   N YL
Sbjct: 219 ISQEQLNKYQNYFIEEAIGRPVPFWKDLVKQSPIYITNSNPYL 261


>U40942-6|AAP68937.1|  709|Caenorhabditis elegans High
           temperature-induced dauerformation protein 1, isoform b
           protein.
          Length = 709

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 92  LIKNVCEAQIKANSNFYLLITRQKNVF 172
           +  NV + Q   NSN    I R++NVF
Sbjct: 500 VFNNVIQYQFDGNSNLIYTIIRKRNVF 526


>U40942-5|AAC47068.1|  729|Caenorhabditis elegans High
           temperature-induced dauerformation protein 1, isoform a
           protein.
          Length = 729

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 92  LIKNVCEAQIKANSNFYLLITRQKNVF 172
           +  NV + Q   NSN    I R++NVF
Sbjct: 500 VFNNVIQYQFDGNSNLIYTIIRKRNVF 526


>AY070228-1|AAL55425.1|  729|Caenorhabditis elegans HID-1 protein.
          Length = 729

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 92  LIKNVCEAQIKANSNFYLLITRQKNVF 172
           +  NV + Q   NSN    I R++NVF
Sbjct: 500 VFNNVIQYQFDGNSNLIYTIIRKRNVF 526


>AF078783-4|AAC26919.2|   87|Caenorhabditis elegans Hypothetical
           protein H10E21.1 protein.
          Length = 87

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 300 FFFFNVSYPYLESVCFIAINKILR 229
           FFFF  S+P++  + +I+  K++R
Sbjct: 62  FFFFAFSWPFIARLLYISYLKMMR 85


>Z82287-2|CAB05312.1|  502|Caenorhabditis elegans Hypothetical
           protein ZK550.2 protein.
          Length = 502

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 303 FFFFFNVSYPYLESVCFIAINKIL 232
           F FFF +++P++ES      ++IL
Sbjct: 395 FVFFFGIAFPFVESPAAALYSEIL 418


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,318,409
Number of Sequences: 27780
Number of extensions: 117261
Number of successful extensions: 234
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)