Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1241
         (305 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18750.1 68416.m02380 protein kinase family protein contains ...    27   1.9  
At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) near...    27   2.5  
At1g02080.1 68414.m00130 transcriptional regulator-related conta...    27   3.3  

>At3g18750.1 68416.m02380 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 567

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 175 LEINVQNIPFVSSLSKLISQNFIYSYKTD 261
           LE+  QN+ F++ L  ++  N I ++KTD
Sbjct: 413 LELTDQNVTFIAELIDILLVNMIPTWKTD 441


>At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) nearly
           identical to RelA/SpoT homolog RSH2 [Arabidopsis
           thaliana] GI:7141306; contains Pfam profiles PF01966: HD
           domain, PF04607: Region found in RelA / SpoT proteins
          Length = 709

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 220 WKVKIQRGCSVHLFPNKNIFLSS 152
           WKV+++  C  HL+PN++  +S+
Sbjct: 371 WKVQLENLCFKHLYPNQHNEMST 393


>At1g02080.1 68414.m00130 transcriptional regulator-related contains
           Pfam PF04054: CCR4-Not complex component, Not1; contains
           TIGRFAM TIGR01612: reticulocyte binding protein; similar
           to General negative regulator of transcription subunit 1
           (SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
           gb|T44328 and gb|AA395265
          Length = 2378

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 120 LKLIVISICLLLDKKMFLFGNKCTE 194
           L+L++ S+    D KMFLFG+K  E
Sbjct: 755 LRLVLDSLRKPADSKMFLFGSKALE 779


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,615,000
Number of Sequences: 28952
Number of extensions: 96177
Number of successful extensions: 180
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 311361520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)