Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1240
         (533 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    25   0.42 
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    23   1.7  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    23   1.7  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    23   2.2  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    21   9.0  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   9.0  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = -3

Query: 519 LPIRWLLINAITYERGGTVAR--SHGVII 439
           LP+RW+ + ++T++R  T +   S GV++
Sbjct: 656 LPVRWMALESLTHQRYTTYSDVWSFGVLL 684


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 373 IRKTLLAGGSRSIREVKIISS*YYHTVRPC 462
           + + +L GGS  I +V+ + + Y++   PC
Sbjct: 159 VHEIVLVGGSTRIPKVQQLITEYFNGKEPC 188


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 373 IRKTLLAGGSRSIREVKIISS*YYHTVRPC 462
           + + +L GGS  I +V+ + + Y++   PC
Sbjct: 159 VHEIVLVGGSTRIPKVQQLITEYFNGKEPC 188


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 166 DSCVNFVEGTGGYVFSSTNFEK 231
           DSC N + G   Y F + NF++
Sbjct: 390 DSCSNILTGDQFYNFLNHNFDR 411


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 269 GRLDECFCC 243
           G L EC+CC
Sbjct: 76  GFLKECYCC 84


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 108 AKQHDGMLTESNDLIQILSTSNLE 37
           A Q +   T+  D  ++ STSNL+
Sbjct: 155 AVQEERQRTKDRDTSEVESTSNLQ 178


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,878
Number of Sequences: 336
Number of extensions: 1867
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)