Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1240
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   5.4  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   9.4  

>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 16  LITATPDLKIGGGKNLNQVVGFSEHSVVLLGE 111
           ++  TPD  +GG K+L Q V   E+  +LLG+
Sbjct: 503 VLMLTPD--VGGTKSLEQYVNGWENRTLLLGD 532


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -3

Query: 231 LLEVGRRENVASGAFNKVHA*IVSLLERSSQSFRIFSLFLLAKQHDGMLTESNDLIQI 58
           L+   RR  + S  F+K    IVS+L   +    IF  F+LA     +    N L +I
Sbjct: 279 LMSHSRRSKLLSAVFSKKSFLIVSVLLLIAHFNTIFHPFILADNRHYLFYVFNRLFRI 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,940,628
Number of Sequences: 5004
Number of extensions: 34012
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)