Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1240
(533 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49128-2|CAA88959.1| 848|Caenorhabditis elegans Hypothetical pr... 29 2.8
U64605-6|ABB88241.1| 139|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z81049-4|CAJ76935.1| 496|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z81049-3|CAB02846.2| 631|Caenorhabditis elegans Hypothetical pr... 28 4.8
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 27 6.4
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 27 6.4
AF040648-7|AAK26140.1| 386|Caenorhabditis elegans Lethal protei... 27 6.4
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 27 6.4
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 27 6.4
U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr... 27 8.5
>Z49128-2|CAA88959.1| 848|Caenorhabditis elegans Hypothetical
protein M03C11.2 protein.
Length = 848
Score = 28.7 bits (61), Expect = 2.8
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -1
Query: 413 RMLLLPPARRVFLILVYADRANPKRIHVGAGTELRQLLAEELVRDRVGGRLDECF-CCGA 237
R +LL PA R+ ++ A RA I VG E QLL E L R +G F CC
Sbjct: 555 RFMLLNPADRLSEVVTSA-RAT---ILVGGTMEPAQLLVETLSRGSIGADSIRRFSCCHV 610
Query: 236 FNFSKLV 216
+ S+L+
Sbjct: 611 IDDSQLL 617
>U64605-6|ABB88241.1| 139|Caenorhabditis elegans Hypothetical
protein C05D9.9b protein.
Length = 139
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 370 RIRKTLLAGGSRSIREVKIISS*YYHTVRPCDRS--ASFICNG 492
++ +TL+ R ++E K + + T+RPC+++ S CNG
Sbjct: 31 KVGETLILDIGREVKEWKRVRNGIEETIRPCEKNEKTSDTCNG 73
>Z81049-4|CAJ76935.1| 496|Caenorhabditis elegans Hypothetical
protein C48D1.1b protein.
Length = 496
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +1
Query: 55 KNLNQVVGFSEHSVVLLGEKKQTKDSETLRGTLQKTDDS---CVNFVE 189
+N+N++V E SV G+K +TK SE T++ T+ S C N ++
Sbjct: 346 ENVNRLVDILEWSV---GQKNETKLSEFFEITIKMTEKSSKACTNMIQ 390
>Z81049-3|CAB02846.2| 631|Caenorhabditis elegans Hypothetical
protein C48D1.1a protein.
Length = 631
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +1
Query: 55 KNLNQVVGFSEHSVVLLGEKKQTKDSETLRGTLQKTDDS---CVNFVE 189
+N+N++V E SV G+K +TK SE T++ T+ S C N ++
Sbjct: 481 ENVNRLVDILEWSV---GQKNETKLSEFFEITIKMTEKSSKACTNMIQ 525
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 27.5 bits (58), Expect = 6.4
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +1
Query: 4 VTTSLITATPDLKIGGGKNLNQ--VVGFSEHSVVLLGEKKQTKDSETLRGTLQKTDDSCV 177
VT SLI+ D + G ++ Q V GF E + +GE+ + +DS L+ +L + +
Sbjct: 4077 VTPSLISRL-DEQYAGQEDFKQGYVDGFKEGASSRVGERSRFEDSRKLQQSLTELTERLT 4135
Query: 178 NFVEGTGGYVFSSTNFEKLN 237
+ + G + S+ + N
Sbjct: 4136 SLEKTKGDEIHSTKIYHVYN 4155
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 27.5 bits (58), Expect = 6.4
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +1
Query: 4 VTTSLITATPDLKIGGGKNLNQ--VVGFSEHSVVLLGEKKQTKDSETLRGTLQKTDDSCV 177
VT SLI+ D + G ++ Q V GF E + +GE+ + +DS L+ +L + +
Sbjct: 4074 VTPSLISRL-DEQYAGQEDFKQGYVDGFKEGASSRVGERSRFEDSRKLQQSLTELTERLT 4132
Query: 178 NFVEGTGGYVFSSTNFEKLN 237
+ + G + S+ + N
Sbjct: 4133 SLEKTKGDEIHSTKIYHVYN 4152
>AF040648-7|AAK26140.1| 386|Caenorhabditis elegans Lethal protein
805, isoform c protein.
Length = 386
Score = 27.5 bits (58), Expect = 6.4
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +1
Query: 4 VTTSLITATPDLKIGGGKNLNQ--VVGFSEHSVVLLGEKKQTKDSETLRGTLQKTDDSCV 177
VT SLI+ D + G ++ Q V GF E + +GE+ + +DS L+ +L + +
Sbjct: 183 VTPSLISRL-DEQYAGQEDFKQGYVDGFKEGASSRVGERSRFEDSRKLQQSLTELTERLT 241
Query: 178 NFVEGTGGYVFSSTNFEKLN 237
+ + G + S+ + N
Sbjct: 242 SLEKTKGDEIHSTKIYHVYN 261
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 27.5 bits (58), Expect = 6.4
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +1
Query: 4 VTTSLITATPDLKIGGGKNLNQ--VVGFSEHSVVLLGEKKQTKDSETLRGTLQKTDDSCV 177
VT SLI+ D + G ++ Q V GF E + +GE+ + +DS L+ +L + +
Sbjct: 4074 VTPSLISRL-DEQYAGQEDFKQGYVDGFKEGASSRVGERSRFEDSRKLQQSLTELTERLT 4132
Query: 178 NFVEGTGGYVFSSTNFEKLN 237
+ + G + S+ + N
Sbjct: 4133 SLEKTKGDEIHSTKIYHVYN 4152
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 27.5 bits (58), Expect = 6.4
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +1
Query: 4 VTTSLITATPDLKIGGGKNLNQ--VVGFSEHSVVLLGEKKQTKDSETLRGTLQKTDDSCV 177
VT SLI+ D + G ++ Q V GF E + +GE+ + +DS L+ +L + +
Sbjct: 4077 VTPSLISRL-DEQYAGQEDFKQGYVDGFKEGASSRVGERSRFEDSRKLQQSLTELTERLT 4135
Query: 178 NFVEGTGGYVFSSTNFEKLN 237
+ + G + S+ + N
Sbjct: 4136 SLEKTKGDEIHSTKIYHVYN 4155
>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical
protein F31E3.4 protein.
Length = 1131
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 513 IRWLLI-NAITYERGGTVARSHGVIILR*DDLDFTDAPTSACEK 385
+ W L N ++ + GG ++ + +I DD+ TDA S C K
Sbjct: 555 LAWALARNGVSLKAGGVLSATQQIIKTVIDDVARTDASGSICSK 598
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,930,190
Number of Sequences: 27780
Number of extensions: 197432
Number of successful extensions: 533
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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