Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1240
         (533 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08850.2 68417.m01455 leucine-rich repeat family protein / pr...    32   0.28 
At5g38360.1 68418.m04630 esterase/lipase/thioesterase family pro...    29   1.5  
At3g05820.1 68416.m00653 beta-fructofuranosidase, putative / inv...    29   1.5  
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co...    27   5.9  
At4g08850.1 68417.m01454 leucine-rich repeat family protein / pr...    27   5.9  
At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly ident...    27   5.9  
At3g58110.1 68416.m06480 expressed protein                             27   7.9  
At3g32400.1 68416.m04142 formin homology 2 domain-containing pro...    27   7.9  
At2g42370.1 68415.m05243 expressed protein                             27   7.9  

>At4g08850.2 68417.m01455 leucine-rich repeat family protein / protein
            kinase family protein contains Pfam domains PF00560:
            Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 1009

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +1

Query: 97   VLLGEKKQTKDSETLRGTLQKTDDSCVNFVEGTGGYVFSSTNFEKLN 237
            +LLGE  + K S+     L K D S  + V GT GYV   T F+ L+
Sbjct: 911  ILLGEDYEAKISDFGTAKLLKPDSSNWSAVAGTYGYVAPGTLFDPLD 957


>At5g38360.1 68418.m04630 esterase/lipase/thioesterase family
           protein low similarity to SP|P49323 Non-heme
           chloroperoxidase (EC 1.11.1.10) (Chloride peroxidase)
           {Streptomyces lividans}; contains Interpro entry
           IPR000379
          Length = 242

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 76  GFSEHSVVLLGEKKQTKDSETLRGTLQKTDDSCVNFVEGTGG 201
           GF  ++V LLG+ +  +   T+ GTLQ       +F+E   G
Sbjct: 94  GFDSYAVSLLGQGESDEPLGTVAGTLQTHASDIADFIESNLG 135


>At3g05820.1 68416.m00653 beta-fructofuranosidase, putative /
           invertase, putative / saccharase, putative /
           beta-fructosidase, putative similar to neutral invertase
           [Daucus carota] GI:4200165; contains Pfam profile
           PF04853: Plant neutral invertase
          Length = 633

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 167 SSVFWSVPLKVSESLVCFFSPSSTTECS 84
           SS+FW   L++ ES VC  + S   +CS
Sbjct: 596 SSLFWEEDLELLESCVCVLTKSGRKKCS 623


>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
           contains Pfam profile PF00856: SET domain
          Length = 1423

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 429 DDLDFTDAPTSACEKSLSYPCLRRQSEP 346
           D L   + P   CE +++ PCLR + +P
Sbjct: 672 DALAIHEPPPPGCESNINMPCLRYKYQP 699


>At4g08850.1 68417.m01454 leucine-rich repeat family protein / protein
            kinase family protein contains Pfam domains PF00560:
            Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 1045

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 97   VLLGEKKQTKDSETLRGTLQKTDDSCVNFVEGTGGYV 207
            +LLGE  + K S+     L K D S  + V GT GYV
Sbjct: 911  ILLGEDYEAKISDFGTAKLLKPDSSNWSAVAGTYGYV 947


>At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly
           identical to ania-6a type cyclin [Arabidopsis thaliana]
           GI:13924511
          Length = 416

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 4   VTTSLITATPDLKIGGGKNLNQVVGFSEHSVVLLGEKKQTKDSETLRG 147
           VTT    AT   K G   N   +VG S +    +G++++  D E  RG
Sbjct: 301 VTTPHEKATDSKKSGTESNSQPIVGDSSYERSKVGDRERESDREKERG 348


>At3g58110.1 68416.m06480 expressed protein
          Length = 784

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 184 VEGTGGYVFSSTNFEKLNAPQQK 252
           V+G+GG V S+T  EKL   Q++
Sbjct: 687 VKGSGGLVLSTTEIEKLRLKQEE 709


>At3g32400.1 68416.m04142 formin homology 2 domain-containing
           protein / FH2 domain-containing protein common family
           members: At2g43800, At3g25500, At5g48360, At4g15200,
           At3g05470, At3g07540, At5g07780, At5g07650 [Arabidopsis
           thaliana];
          Length = 488

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/66 (21%), Positives = 35/66 (53%)
 Frame = -3

Query: 231 LLEVGRRENVASGAFNKVHA*IVSLLERSSQSFRIFSLFLLAKQHDGMLTESNDLIQILS 52
           +L +G   N  +   + +   + SLL+ +    R   +F+LA++  G+L    D++ + +
Sbjct: 295 ILSLGNALNHGTARGSAIGFHLDSLLKLTDTRSRNIFIFVLAEKLPGLLNFPKDMVSLEA 354

Query: 51  TSNLEV 34
            +N+++
Sbjct: 355 ATNIQL 360


>At2g42370.1 68415.m05243 expressed protein
          Length = 715

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 184 VEGTGGYVFSSTNFEKLNAPQQK 252
           V+GTGG V S+   EKL   ++K
Sbjct: 624 VKGTGGLVLSTAEIEKLRLKEEK 646


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,384,560
Number of Sequences: 28952
Number of extensions: 186410
Number of successful extensions: 452
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)