Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1239
         (435 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4UMG6 Cluster: Permeases of the major facilitator supe...    33   3.5  
UniRef50_Q05353 Cluster: 3,4-dihydroxyphenylacetate 2,3-dioxygen...    32   6.0  

>UniRef50_Q4UMG6 Cluster: Permeases of the major facilitator
           superfamily; n=1; Rickettsia felis|Rep: Permeases of the
           major facilitator superfamily - Rickettsia felis
           (Rickettsia azadi)
          Length = 397

 Score = 32.7 bits (71), Expect = 3.5
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -2

Query: 269 VLTNISTGNEII-MNLHEELDLIYPKTTVSIHDPPFSVFKRSTITVLFFFFLSFYIVLI 96
           +L NI+T + +  + L   +  I   T VSI    F +FKR T T L + F S +I ++
Sbjct: 294 LLNNITTSSSLSKIQLLLVMTSITTSTAVSILYKNFPIFKRFTFTTLIYAFSSIFIYVV 352


>UniRef50_Q05353 Cluster: 3,4-dihydroxyphenylacetate
           2,3-dioxygenase; n=94; Proteobacteria|Rep:
           3,4-dihydroxyphenylacetate 2,3-dioxygenase - Escherichia
           coli
          Length = 276

 Score = 31.9 bits (69), Expect = 6.0
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 135 NSYSRSFEYGK---WRIVNRDRRFWIYQIQFFMQIHDYFVSRGNVGENLLPCL 284
           N  S   EYG     R +N D+RF +  I  F  +HD+  SR  +GE ++  +
Sbjct: 117 NIPSLKLEYGSVVPMRYMNEDKRFKVVSISAFCTVHDFADSR-KLGERIVKAI 168


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 386,772,746
Number of Sequences: 1657284
Number of extensions: 7162931
Number of successful extensions: 16643
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16621
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21496989549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)