Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1239
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   0.94 
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   1.6  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   2.9  
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     26   2.9  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    25   6.7  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    24   8.8  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    24   8.8  

>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.5 bits (58), Expect = 0.94
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -1

Query: 309 GRHAHTGALS--TAISSHQHFHGKRNNHE 229
           G H H+G+LS  + + +H   H K + HE
Sbjct: 227 GHHGHSGSLSLKSLVPNHHDKHDKHDKHE 255


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -2

Query: 143  ITVLFFFFLSFYIVLILF 90
            +T+ FF FLS +I++++F
Sbjct: 2183 LTIAFFLFLSMWIIMLMF 2200


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 233  MNLHEELDLIYPKTTVSIHDPPFSVFKR 150
            + L E L  I+PK T+ + D P+S+ K+
Sbjct: 1230 IELAEILKKIFPKLTLVLIDDPWSILKK 1257


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 297 HTGALSTAISSHQHFHGKRN 238
           ++ +L+ A+ SH  FHGK N
Sbjct: 174 NSNSLNQAVESHSKFHGKGN 193


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 196 FGYIKSNSSCKFMIISFPVEMLVRTYC 276
           F ++K   + KF+II F  E+    YC
Sbjct: 86  FFFLKEQQTLKFIIIVFQSEIQENEYC 112


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 11/51 (21%), Positives = 25/51 (49%)
 Frame = +3

Query: 168  WRIVNRDRRFWIYQIQFFMQIHDYFVSRGNVGENLLPCLGLPCVRADRKID 320
            W+I++ D R  + +   ++   DY + + N   N++  L    V+   K++
Sbjct: 2491 WKILSSDNRSDLSKSLIYLLTRDYHIKQVNNRPNVISTLVSSFVKCAAKLE 2541


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 368 TDCCSCQRKKRKSSLSPFEEMT 433
           T C +CQ    K  +SPF+E T
Sbjct: 363 THCFACQLPFPKPPVSPFDEST 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,655,043
Number of Sequences: 5004
Number of extensions: 31825
Number of successful extensions: 62
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)