BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1239 (435 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 27 0.94 SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 27 1.6 SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 26 2.9 SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 26 2.9 SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces... 25 6.7 SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 24 8.8 SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 24 8.8 >SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 650 Score = 27.5 bits (58), Expect = 0.94 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = -1 Query: 309 GRHAHTGALS--TAISSHQHFHGKRNNHE 229 G H H+G+LS + + +H H K + HE Sbjct: 227 GHHGHSGSLSLKSLVPNHHDKHDKHDKHE 255 >SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosaccharomyces pombe|chr 2|||Manual Length = 2358 Score = 26.6 bits (56), Expect = 1.6 Identities = 8/18 (44%), Positives = 15/18 (83%) Frame = -2 Query: 143 ITVLFFFFLSFYIVLILF 90 +T+ FF FLS +I++++F Sbjct: 2183 LTIAFFLFLSMWIIMLMF 2200 >SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1338 Score = 25.8 bits (54), Expect = 2.9 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = -2 Query: 233 MNLHEELDLIYPKTTVSIHDPPFSVFKR 150 + L E L I+PK T+ + D P+S+ K+ Sbjct: 1230 IELAEILKKIFPKLTLVLIDDPWSILKK 1257 >SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual Length = 463 Score = 25.8 bits (54), Expect = 2.9 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = -1 Query: 297 HTGALSTAISSHQHFHGKRN 238 ++ +L+ A+ SH FHGK N Sbjct: 174 NSNSLNQAVESHSKFHGKGN 193 >SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 374 Score = 24.6 bits (51), Expect = 6.7 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = +1 Query: 196 FGYIKSNSSCKFMIISFPVEMLVRTYC 276 F ++K + KF+II F E+ YC Sbjct: 86 FFFLKEQQTLKFIIIVFQSEIQENEYC 112 >SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 2|||Manual Length = 3699 Score = 24.2 bits (50), Expect = 8.8 Identities = 11/51 (21%), Positives = 25/51 (49%) Frame = +3 Query: 168 WRIVNRDRRFWIYQIQFFMQIHDYFVSRGNVGENLLPCLGLPCVRADRKID 320 W+I++ D R + + ++ DY + + N N++ L V+ K++ Sbjct: 2491 WKILSSDNRSDLSKSLIYLLTRDYHIKQVNNRPNVISTLVSSFVKCAAKLE 2541 >SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ssl1|Schizosaccharomyces pombe|chr 3|||Manual Length = 421 Score = 24.2 bits (50), Expect = 8.8 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +2 Query: 368 TDCCSCQRKKRKSSLSPFEEMT 433 T C +CQ K +SPF+E T Sbjct: 363 THCFACQLPFPKPPVSPFDEST 384 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,655,043 Number of Sequences: 5004 Number of extensions: 31825 Number of successful extensions: 62 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 62 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 156095170 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -