Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1239
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0332 + 2971361-2971439,2971596-2971783,2971985-2972062,297...    31   0.41 
06_03_1486 + 30470838-30472460                                         28   2.9  
04_03_0411 - 15583706-15583764,15583924-15583999,15584268-15584573     28   3.8  

>08_01_0332 +
           2971361-2971439,2971596-2971783,2971985-2972062,
           2972354-2972425,2972513-2972631,2972858-2972942,
           2973096-2973185,2973268-2973369,2973448-2973624,
           2973874-2973954,2974511-2974582,2974662-2974756,
           2974831-2974919,2975016-2975078,2975161-2975204,
           2975554-2975685
          Length = 521

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 164 SVFKRSTITVLFFFFLSFYIVLILFAH 84
           SV +  T+T  FFFF  F+   ILF H
Sbjct: 295 SVVEADTVTTFFFFFFFFFCANILFHH 321


>06_03_1486 + 30470838-30472460
          Length = 540

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 312 SGRHAHTGALSTAISSHQHFHGKR 241
           SGRHA+T A+      HQ FH  R
Sbjct: 109 SGRHAYTCAMPEPARRHQPFHAPR 132


>04_03_0411 - 15583706-15583764,15583924-15583999,15584268-15584573
          Length = 146

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 248 PWKCW*ELIAVLRAPVCACRPENRYR 325
           P +CW + ++V  A  CAC   + +R
Sbjct: 115 PNQCWPQFLSVFTAKTCACEQPSMFR 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,186,509
Number of Sequences: 37544
Number of extensions: 189909
Number of successful extensions: 376
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)