Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1239
         (435 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   1.7  
SB_24669| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6)                 28   3.8  
SB_43126| Best HMM Match : Myosin_head (HMM E-Value=4.1e-32)           27   5.0  
SB_5198| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.0  

>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 135  NSYSRSFEYGKWRIVNRDRRFWI-YQIQFFMQIH 233
            N Y+RS +YG W   +R+ R W+   +Q   QIH
Sbjct: 2553 NDYTRSGKYGGWWTPHRNTRQWLQVDLQKPSQIH 2586


>SB_24669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 258 VGENLLPCLGLPCVRADRKIDTVLCRLSRS 347
           + +N+ PCL +PC    R    + CRLS S
Sbjct: 122 IPDNITPCLVIPCRVRVRWHPVITCRLSYS 151


>SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6)
          Length = 383

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -1

Query: 312 SGRHAHTGALSTAISSH--QHFHGKRNNH 232
           + RH HTG  ST +S+H     HG + NH
Sbjct: 149 TARHPHTGTKSTMLSTHGTTPSHGYQVNH 177


>SB_43126| Best HMM Match : Myosin_head (HMM E-Value=4.1e-32)
          Length = 898

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -1

Query: 285 LSTAISSHQHFHGKRNN---HEFA*RIGFDISKNDGLYSRS 172
           L+ ++ SHQHF G       H +A ++ +DI   DG   R+
Sbjct: 817 LNNSVGSHQHFQGVSGGFIIHHYAGKVSYDI---DGFCERN 854


>SB_5198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1037

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 321 YRFSGRHAHTGALSTAISSHQHFHG 247
           Y+ +G+HA+T  LS  +S+ +  HG
Sbjct: 654 YKTAGKHAYTVRLSNLVSASEVLHG 678


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,164,430
Number of Sequences: 59808
Number of extensions: 230773
Number of successful extensions: 539
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)