Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1239
         (435 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32970.1 68414.m04060 subtilase family protein similar to sub...    29   1.4  
At5g28250.1 68418.m03425 Ulp1 protease family protein contains P...    28   2.4  
At1g05820.1 68414.m00609 protease-associated (PA) domain-contain...    27   4.1  
At5g51350.1 68418.m06367 leucine-rich repeat transmembrane prote...    26   9.5  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    26   9.5  

>At1g32970.1 68414.m04060 subtilase family protein similar to
           subtilase GI:9957714 from [Oryza sativa]
          Length = 734

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 255 NVGENLLPCLGLPCVRADRKIDTVLCRLSRS 347
           N G  L PC G PC+  D ++ T +    RS
Sbjct: 410 NPGHQLSPCFGFPCLAVDYELGTDILFYIRS 440


>At5g28250.1 68418.m03425 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 939

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 307 TGKSIPCYADCLGLI*TVPANRLLFMSKKK 396
           TGK IP Y+   GL   V   R++ M KKK
Sbjct: 123 TGKQIPYYSSLFGLEEDVMVERVITMLKKK 152


>At1g05820.1 68414.m00609 protease-associated (PA) domain-containing
           protein contains weak similarity to protease associated
           (PA) domain proteins, Pfam:PF02225
          Length = 441

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 161 VFKRSTITVLFFFFLSFYIVLIL 93
           V   ST  VL FFF+S + +LIL
Sbjct: 257 VISASTFLVLLFFFMSSWFILIL 279


>At5g51350.1 68418.m06367 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 895

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 219 FMQIHDYFVSRGNVGENLLPCLGLPCVRADRKIDTVL-CRLSRSNL 353
           F  + D+F++   V +NL+ C     VR ++   +V+   LS  NL
Sbjct: 43  FNSLKDWFINTPEVSDNLVACCSWSGVRCNQNSTSVVSVDLSSKNL 88


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 336 VGITRYRFSGRHAHTGALSTAISSHQ-HFHGKRNNHE 229
           VG+  +     HAH G+  T   SHQ H H    +H+
Sbjct: 536 VGLIFFHEEHHHAHGGSGCTHSHSHQSHSHKNEEHHQ 572


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,461,421
Number of Sequences: 28952
Number of extensions: 160881
Number of successful extensions: 420
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)