Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1238
         (308 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E49D8F Cluster: PREDICTED: similar to scavenger ...    31   5.0  
UniRef50_Q17A66 Cluster: Mixed-lineage leukemia protein, mll; n=...    31   6.6  
UniRef50_Q94AS9 Cluster: Cyclic nucleotide-gated ion channel 4; ...    31   6.6  

>UniRef50_UPI0000E49D8F Cluster: PREDICTED: similar to scavenger
           receptor cysteine-rich protein precursor; n=1;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           scavenger receptor cysteine-rich protein precursor -
           Strongylocentrotus purpuratus
          Length = 563

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 38  EQSDW*VHTCTHRDEIGCIGKYFSNIEYLRPKG*DVRCIRVKL 166
           +   W VH CTH+D+I    +  S + +L+  G  + C+ V L
Sbjct: 454 DSKGWGVHNCTHKDDIAIKCRNKSFLSWLQITGIVLGCVTVLL 496


>UniRef50_Q17A66 Cluster: Mixed-lineage leukemia protein, mll; n=2;
            Culicidae|Rep: Mixed-lineage leukemia protein, mll -
            Aedes aegypti (Yellowfever mosquito)
          Length = 2874

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 168  HSLTRMHRTSYPLGLRYSIFEKYFPIHPISSRCVHVCTYQSLC 40
            H L   H  +Y   + Y I   Y+ +   + RC +VC+   +C
Sbjct: 2525 HQLQNFHTPNYIYPIGYKIIRFYWSMRRPNKRCRYVCSIADVC 2567


>UniRef50_Q94AS9 Cluster: Cyclic nucleotide-gated ion channel 4;
           n=4; core eudicotyledons|Rep: Cyclic nucleotide-gated
           ion channel 4 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 694

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -1

Query: 140 LIL*ALGIRYLKNIFLYTLSRLDVCMCVLTN 48
           L++ A G+ ++  +FLYTLS  D CMC+L +
Sbjct: 95  LLVCATGL-FVDPLFLYTLSVSDTCMCLLVD 124


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 308,178,544
Number of Sequences: 1657284
Number of extensions: 5814136
Number of successful extensions: 11071
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11069
length of database: 575,637,011
effective HSP length: 79
effective length of database: 444,711,575
effective search space used: 10228366225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)