Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1238
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    26   1.1  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   3.4  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   3.4  

>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 107 KNIFLYTLSRLDVCMCVLTNRFVR 36
           K IF++ LS L + +C +T RF+R
Sbjct: 63  KIIFIFQLSILTLYICCITFRFIR 86


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 254 SPWKSIVNIC*VRYFIRKIGTRLRFEYR 171
           SP + ++N+    Y  + +G  +RF +R
Sbjct: 179 SPSRPVINVSFFNYIFQNLGWLIRFSFR 206


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 204 KNWYPPEIRIPVHSLTRMHRTSYPLGLRYS 115
           +N+ P E  IP  +  R++RTS+  GLRYS
Sbjct: 311 QNFEPGENLIPSRNDGRINRTSH--GLRYS 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,329,802
Number of Sequences: 5004
Number of extensions: 26363
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)