Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1238
         (308 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790...    28   1.7  
11_01_0782 + 6543906-6544702,6545717-6547850                           27   2.3  
01_06_1315 + 36226262-36226533,36227946-36228060,36228710-362287...    27   3.0  
03_02_0019 - 5031667-5032614                                           26   6.9  
03_01_0603 + 4445977-4446882                                           26   6.9  
03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65...    25   9.2  

>01_07_0016 -
           40476014-40476333,40476598-40476740,40476945-40479099,
           40479205-40480047,40480176-40480269,40480356-40481207,
           40481367-40481437,40481750-40481821,40481977-40482019
          Length = 1530

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 186 EIRIPVHSLTRMHRTSYPLGLRYSIFEKYFPIHPISSRCVHV 61
           E  +P H + R    S PLGL +S  E   P  P+SS  + V
Sbjct: 697 EANLPQHDVPRESELS-PLGLLWSELEGMHPKQPLSSNVLGV 737


>11_01_0782 + 6543906-6544702,6545717-6547850
          Length = 976

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 120 YSIFEKYFPIHPISSRCVHVCTYQSLCSARSSAD*Y 13
           +S  E  FP    SSR V   T QS+  A SSA+ Y
Sbjct: 279 WSTIESAFPKDGFSSRIVVTTTVQSVAKACSSANGY 314


>01_06_1315 +
           36226262-36226533,36227946-36228060,36228710-36228752,
           36229953-36230329,36230330-36230481,36230591-36230838,
           36230919-36231047,36231130-36231739,36231842-36232086,
           36232195-36232325
          Length = 773

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 114 SNT*GLKDKTSGAFVLSYAPVFESQAGTN 200
           +NT G  D T+   VL YAP   S  G N
Sbjct: 529 TNTQGTFDNTTAVAVLEYAPTRASATGNN 557


>03_02_0019 - 5031667-5032614
          Length = 315

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 175 YSNLRRVPIFLMKYRTQQMFTIDFH 249
           +S+ RR P  L++ R  ++F +D H
Sbjct: 167 WSDNRRAPALLLQSRASEVFGVDIH 191


>03_01_0603 + 4445977-4446882
          Length = 301

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 175 YSNLRRVPIFLMKYRTQQMFTIDFH 249
           +S+ RR P  L++ R  ++F +D H
Sbjct: 161 WSDNRRAPALLLQSRASEVFGVDIH 185


>03_01_0082 +
           653041-653137,653219-653496,653596-653689,653804-653886,
           654027-654247,654395-654533,654628-654710,654824-655036,
           655099-655494,655587-655758,656085-656276,656363-656569,
           656661-656753,656957-657156,657329-657838,658114-658184,
           658322-658963,659057-659207,659425-659665
          Length = 1360

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 226 QMFTIDFHGEE*HTIIKIKPA 288
           Q+F + FHG E H++  I PA
Sbjct: 777 QVFHMQFHGREVHSLCFIDPA 797


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,036,286
Number of Sequences: 37544
Number of extensions: 151702
Number of successful extensions: 291
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)