BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1238 (308 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790... 28 1.7 11_01_0782 + 6543906-6544702,6545717-6547850 27 2.3 01_06_1315 + 36226262-36226533,36227946-36228060,36228710-362287... 27 3.0 03_02_0019 - 5031667-5032614 26 6.9 03_01_0603 + 4445977-4446882 26 6.9 03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65... 25 9.2 >01_07_0016 - 40476014-40476333,40476598-40476740,40476945-40479099, 40479205-40480047,40480176-40480269,40480356-40481207, 40481367-40481437,40481750-40481821,40481977-40482019 Length = 1530 Score = 27.9 bits (59), Expect = 1.7 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = -3 Query: 186 EIRIPVHSLTRMHRTSYPLGLRYSIFEKYFPIHPISSRCVHV 61 E +P H + R S PLGL +S E P P+SS + V Sbjct: 697 EANLPQHDVPRESELS-PLGLLWSELEGMHPKQPLSSNVLGV 737 >11_01_0782 + 6543906-6544702,6545717-6547850 Length = 976 Score = 27.5 bits (58), Expect = 2.3 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = -3 Query: 120 YSIFEKYFPIHPISSRCVHVCTYQSLCSARSSAD*Y 13 +S E FP SSR V T QS+ A SSA+ Y Sbjct: 279 WSTIESAFPKDGFSSRIVVTTTVQSVAKACSSANGY 314 >01_06_1315 + 36226262-36226533,36227946-36228060,36228710-36228752, 36229953-36230329,36230330-36230481,36230591-36230838, 36230919-36231047,36231130-36231739,36231842-36232086, 36232195-36232325 Length = 773 Score = 27.1 bits (57), Expect = 3.0 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +3 Query: 114 SNT*GLKDKTSGAFVLSYAPVFESQAGTN 200 +NT G D T+ VL YAP S G N Sbjct: 529 TNTQGTFDNTTAVAVLEYAPTRASATGNN 557 >03_02_0019 - 5031667-5032614 Length = 315 Score = 25.8 bits (54), Expect = 6.9 Identities = 9/25 (36%), Positives = 16/25 (64%) Frame = +1 Query: 175 YSNLRRVPIFLMKYRTQQMFTIDFH 249 +S+ RR P L++ R ++F +D H Sbjct: 167 WSDNRRAPALLLQSRASEVFGVDIH 191 >03_01_0603 + 4445977-4446882 Length = 301 Score = 25.8 bits (54), Expect = 6.9 Identities = 9/25 (36%), Positives = 16/25 (64%) Frame = +1 Query: 175 YSNLRRVPIFLMKYRTQQMFTIDFH 249 +S+ RR P L++ R ++F +D H Sbjct: 161 WSDNRRAPALLLQSRASEVFGVDIH 185 >03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-653886, 654027-654247,654395-654533,654628-654710,654824-655036, 655099-655494,655587-655758,656085-656276,656363-656569, 656661-656753,656957-657156,657329-657838,658114-658184, 658322-658963,659057-659207,659425-659665 Length = 1360 Score = 25.4 bits (53), Expect = 9.2 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +1 Query: 226 QMFTIDFHGEE*HTIIKIKPA 288 Q+F + FHG E H++ I PA Sbjct: 777 QVFHMQFHGREVHSLCFIDPA 797 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,036,286 Number of Sequences: 37544 Number of extensions: 151702 Number of successful extensions: 291 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 287 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 291 length of database: 14,793,348 effective HSP length: 71 effective length of database: 12,127,724 effective search space used: 375959444 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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