Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1238
         (308 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40864| Best HMM Match : Pox_G5 (HMM E-Value=0.48)                   27   2.4  
SB_14414| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19)                 26   7.2  
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.2  
SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     25   9.5  
SB_37028| Best HMM Match : Ice_nucleation (HMM E-Value=0.0014)         25   9.5  
SB_20653| Best HMM Match : Sialidase (HMM E-Value=0.35)                25   9.5  
SB_8973| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.5  

>SB_40864| Best HMM Match : Pox_G5 (HMM E-Value=0.48)
          Length = 518

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 174 PVHSLTRMHRTSYPLGLRYSIFEKYFPIHPISSRCVHVCTYQSLCSA 34
           P+  +TR  R +    ++  I  + FP+ P +++ +H C   +L SA
Sbjct: 227 PILEITRQFRINKKTQVQ--ILHRQFPLRPAAAKTIHRCQGNTLDSA 271


>SB_14414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
 Frame = -3

Query: 183 IRIPVHSLTRMHRTSYPLGLRYS-------IFEKYFPIHPISSRCVHVCTYQSL 43
           +R+PV  L RMHRT+ P  +  +        FE YF  H     C HV  + S+
Sbjct: 266 MRLPVTYLYRMHRTNRPQWMPLAPYATPLQAFENYFVRH-----CCHVMLHTSI 314


>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
 Frame = -3

Query: 159  TRMHRTSYPLGLRYSIFEKYFPIHPISS---RCVHVCTYQSLCS 37
            T  H  +YPL     +   Y P+HP S       H  TY  L S
Sbjct: 883  TLTHPLTYPLLTSPPLLTPYLPVHPYSPLDLTLTHPSTYPLLAS 926


>SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19)
          Length = 335

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 10  SILVSGGTRRTKRLVSTHMHTSRRDRVYRK 99
           S +V     R +RL++ H+H S+ D + RK
Sbjct: 289 SHMVQMEIERLERLIAGHVHASKSDELERK 318


>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 50  W*VHTCTHRDEIGCIGKYFSNIEYLRPKG*DVR 148
           W  H C H ++ G + +   N   + P G  VR
Sbjct: 476 WGRHNCRHSEDAGVVCQVHGNTTTIHPPGATVR 508


>SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 921

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 25  GGTRRTKRLVSTHMHTSRRDRVYRKI 102
           G   R KR +  HMHT  + +V+ +I
Sbjct: 380 GKVFRDKRFLDIHMHTHAKSQVWHQI 405


>SB_37028| Best HMM Match : Ice_nucleation (HMM E-Value=0.0014)
          Length = 916

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 177 IPVHSLTRMHRTSYPLGLRYSIFEKYFPIHPISSRCVHVCT 55
           I +H       T YP+ + Y  +  Y P  P +S    +CT
Sbjct: 734 IVMHKKNPCQYTMYPMPVPYVPYVPYVPYVPYASTLCTLCT 774


>SB_20653| Best HMM Match : Sialidase (HMM E-Value=0.35)
          Length = 572

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = +3

Query: 258 ITYYNKNQTRKIIFSCN 308
           + ++++N+T++ IFSCN
Sbjct: 462 VRWFHRNETQQTIFSCN 478


>SB_8973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -2

Query: 103 IFSYTPYLVSMCACVY-LPIAL 41
           IF YTP  VS   C+Y  PIA+
Sbjct: 266 IFCYTPLYVSFYDCIYGRPIAI 287


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,773,679
Number of Sequences: 59808
Number of extensions: 194691
Number of successful extensions: 382
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)