Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1238
         (308 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB002293-1|BAA20755.1|  981|Homo sapiens KIAA0295 protein.             28   4.8  
AK128711-1|BAC87585.1|  206|Homo sapiens protein ( Homo sapiens ...    27   8.5  

>AB002293-1|BAA20755.1|  981|Homo sapiens KIAA0295 protein.
          Length = 981

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 189 PEIRIPVHSLTRMHRTSYPLGLRYSIFEKYFPIHP 85
           P + +PV S    H++  P    YS  + Y P HP
Sbjct: 778 PSVHVPVSSPLTQHQSYIPYMHGYSYSQSYDPNHP 812


>AK128711-1|BAC87585.1|  206|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46878 fis, clone UTERU3014906. ).
          Length = 206

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = -3

Query: 276 FYYSMLFLTVEVNREHLLSTVFH*KNWYPPEIRIPVHSLTRMHRTSY-PLGLRYSIFEKY 100
           +Y+    + + ++   L+ST         P I    HS    H  ++  L L  SI    
Sbjct: 34  YYFIHPSIPLSLHPTILISTHLFAHTSIHPTIHPSAHSSNHAHILAFIHLSLLSSIHTSI 93

Query: 99  FP-IHPISSRCVHVCTYQSL 43
            P IHP +   +H+C + S+
Sbjct: 94  HPPIHPSTHPSIHLCIHSSI 113


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,274,027
Number of Sequences: 237096
Number of extensions: 859130
Number of successful extensions: 1296
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1400773776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)