Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1238
         (308 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U94702-1|AAC47536.1|  361|Drosophila melanogaster mitochondrial ...    28   2.0  
AY051491-1|AAK92915.1|  361|Drosophila melanogaster GH14674p pro...    27   4.7  
AE014134-2410|AAF53341.2|  361|Drosophila melanogaster CG33650-P...    27   4.7  
AE014296-910|AAF47948.2| 4390|Drosophila melanogaster CG17150-PA...    26   8.2  

>U94702-1|AAC47536.1|  361|Drosophila melanogaster mitochondrial DNA
           polymerase accessorysubunit precursor protein.
          Length = 361

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -3

Query: 180 RIPVHSLTRMHRTSYPLGLRY-SIFEKYFPIHPISSRCVHVCTYQSLCSARSSAD*YA 10
           R P++ +  + R S+P   ++ + F+K    HP  ++C  +  +QS CS  +S   +A
Sbjct: 56  REPINPVN-IQRFSFPQSQQFRNNFQKLVKDHPRKAKCPTLLKHQSTCSGPTSHSLFA 112


>AY051491-1|AAK92915.1|  361|Drosophila melanogaster GH14674p
           protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 153 MHRTSYPLGLRY-SIFEKYFPIHPISSRCVHVCTYQSLCSARSS 25
           + R S+P   ++ + F+K    HP  ++C  +  +QS CS  +S
Sbjct: 64  IQRFSFPQSQQFRNNFQKLVKDHPRKAKCPTLLKHQSTCSGPTS 107


>AE014134-2410|AAF53341.2|  361|Drosophila melanogaster CG33650-PA,
           isoform A protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 153 MHRTSYPLGLRY-SIFEKYFPIHPISSRCVHVCTYQSLCSARSS 25
           + R S+P   ++ + F+K    HP  ++C  +  +QS CS  +S
Sbjct: 64  IQRFSFPQSQQFRNNFQKLVKDHPRKAKCPTLLKHQSTCSGPTS 107


>AE014296-910|AAF47948.2| 4390|Drosophila melanogaster CG17150-PA,
           isoform A protein.
          Length = 4390

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 122 GIRYLKNIFLYTLSRLDVCMCVLTNRFVRRVPPLTNMLKF 3
           G+R   NI++Y     D       N+FV  VP + ++ +F
Sbjct: 692 GVRPASNIYVYDEDDADPFQQPQVNQFVENVPDIDDVAQF 731


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,914,372
Number of Sequences: 53049
Number of extensions: 269976
Number of successful extensions: 460
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 589756776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)