BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1238 (308 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical pr... 27 2.7 Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical pr... 27 2.7 AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein. 27 2.7 Z36238-8|CAH04738.1| 448|Caenorhabditis elegans Hypothetical pr... 26 6.2 Z36238-7|CAA85278.2| 506|Caenorhabditis elegans Hypothetical pr... 26 6.2 U80030-12|AAG24159.1| 391|Caenorhabditis elegans Hypothetical p... 25 8.1 U49944-4|AAA93419.1| 457|Caenorhabditis elegans Neuropeptide re... 25 8.1 >Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical protein K12F2.2a protein. Length = 1066 Score = 27.1 bits (57), Expect = 2.7 Identities = 15/43 (34%), Positives = 18/43 (41%) Frame = -3 Query: 192 PPEIRIPVHSLTRMHRTSYPLGLRYSIFEKYFPIHPISSRCVH 64 P IR P+H TR H L S+ K P H C+H Sbjct: 404 PTSIR-PLHRTTRNHSGVEALSKPLSVETKSSPTHNCHDGCIH 445 >Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical protein K12F2.2a protein. Length = 1066 Score = 27.1 bits (57), Expect = 2.7 Identities = 15/43 (34%), Positives = 18/43 (41%) Frame = -3 Query: 192 PPEIRIPVHSLTRMHRTSYPLGLRYSIFEKYFPIHPISSRCVH 64 P IR P+H TR H L S+ K P H C+H Sbjct: 404 PTSIR-PLHRTTRNHSGVEALSKPLSVETKSSPTHNCHDGCIH 445 >AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein. Length = 1066 Score = 27.1 bits (57), Expect = 2.7 Identities = 15/43 (34%), Positives = 18/43 (41%) Frame = -3 Query: 192 PPEIRIPVHSLTRMHRTSYPLGLRYSIFEKYFPIHPISSRCVH 64 P IR P+H TR H L S+ K P H C+H Sbjct: 404 PTSIR-PLHRTTRNHSGVEALSKPLSVETKSSPTHNCHDGCIH 445 >Z36238-8|CAH04738.1| 448|Caenorhabditis elegans Hypothetical protein R74.8b protein. Length = 448 Score = 25.8 bits (54), Expect = 6.2 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = -3 Query: 180 RIPVHSLTRMHRTSYPLGLRYSIFEKYFPI 91 + PV L + YPLG+ Y KY+ I Sbjct: 192 KFPVDELVNNEKLGYPLGVTYDEKSKYWII 221 >Z36238-7|CAA85278.2| 506|Caenorhabditis elegans Hypothetical protein R74.8a protein. Length = 506 Score = 25.8 bits (54), Expect = 6.2 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = -3 Query: 180 RIPVHSLTRMHRTSYPLGLRYSIFEKYFPI 91 + PV L + YPLG+ Y KY+ I Sbjct: 192 KFPVDELVNNEKLGYPLGVTYDEKSKYWII 221 >U80030-12|AAG24159.1| 391|Caenorhabditis elegans Hypothetical protein K12D9.1 protein. Length = 391 Score = 25.4 bits (53), Expect = 8.1 Identities = 11/42 (26%), Positives = 21/42 (50%) Frame = -3 Query: 189 PEIRIPVHSLTRMHRTSYPLGLRYSIFEKYFPIHPISSRCVH 64 P + P+ SL + P GL YSI+ + + + ++ V+ Sbjct: 138 PTVLRPIDSLIECFKKDGPYGLDYSIYSDFEDMQAMFTKTVY 179 >U49944-4|AAA93419.1| 457|Caenorhabditis elegans Neuropeptide receptor family protein1 protein. Length = 457 Score = 25.4 bits (53), Expect = 8.1 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = -1 Query: 110 LKNIFLYTLSRLDVCMCVLTNRFVRRVPPLTNMLK 6 ++NIF+ L+ D MC+L+ + P+TN+ K Sbjct: 60 VQNIFILNLAASDCMMCILS----LPITPITNVYK 90 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,291,435 Number of Sequences: 27780 Number of extensions: 146135 Number of successful extensions: 277 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 274 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 277 length of database: 12,740,198 effective HSP length: 71 effective length of database: 10,767,818 effective search space used: 333802358 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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