Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1238
         (308 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical pr...    27   2.7  
Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical pr...    27   2.7  
AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.     27   2.7  
Z36238-8|CAH04738.1|  448|Caenorhabditis elegans Hypothetical pr...    26   6.2  
Z36238-7|CAA85278.2|  506|Caenorhabditis elegans Hypothetical pr...    26   6.2  
U80030-12|AAG24159.1|  391|Caenorhabditis elegans Hypothetical p...    25   8.1  
U49944-4|AAA93419.1|  457|Caenorhabditis elegans Neuropeptide re...    25   8.1  

>Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical
           protein K12F2.2a protein.
          Length = 1066

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -3

Query: 192 PPEIRIPVHSLTRMHRTSYPLGLRYSIFEKYFPIHPISSRCVH 64
           P  IR P+H  TR H     L    S+  K  P H     C+H
Sbjct: 404 PTSIR-PLHRTTRNHSGVEALSKPLSVETKSSPTHNCHDGCIH 445


>Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical
           protein K12F2.2a protein.
          Length = 1066

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -3

Query: 192 PPEIRIPVHSLTRMHRTSYPLGLRYSIFEKYFPIHPISSRCVH 64
           P  IR P+H  TR H     L    S+  K  P H     C+H
Sbjct: 404 PTSIR-PLHRTTRNHSGVEALSKPLSVETKSSPTHNCHDGCIH 445


>AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.
          Length = 1066

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -3

Query: 192 PPEIRIPVHSLTRMHRTSYPLGLRYSIFEKYFPIHPISSRCVH 64
           P  IR P+H  TR H     L    S+  K  P H     C+H
Sbjct: 404 PTSIR-PLHRTTRNHSGVEALSKPLSVETKSSPTHNCHDGCIH 445


>Z36238-8|CAH04738.1|  448|Caenorhabditis elegans Hypothetical
           protein R74.8b protein.
          Length = 448

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 180 RIPVHSLTRMHRTSYPLGLRYSIFEKYFPI 91
           + PV  L    +  YPLG+ Y    KY+ I
Sbjct: 192 KFPVDELVNNEKLGYPLGVTYDEKSKYWII 221


>Z36238-7|CAA85278.2|  506|Caenorhabditis elegans Hypothetical
           protein R74.8a protein.
          Length = 506

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 180 RIPVHSLTRMHRTSYPLGLRYSIFEKYFPI 91
           + PV  L    +  YPLG+ Y    KY+ I
Sbjct: 192 KFPVDELVNNEKLGYPLGVTYDEKSKYWII 221


>U80030-12|AAG24159.1|  391|Caenorhabditis elegans Hypothetical
           protein K12D9.1 protein.
          Length = 391

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 189 PEIRIPVHSLTRMHRTSYPLGLRYSIFEKYFPIHPISSRCVH 64
           P +  P+ SL    +   P GL YSI+  +  +  + ++ V+
Sbjct: 138 PTVLRPIDSLIECFKKDGPYGLDYSIYSDFEDMQAMFTKTVY 179


>U49944-4|AAA93419.1|  457|Caenorhabditis elegans Neuropeptide
           receptor family protein1 protein.
          Length = 457

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 110 LKNIFLYTLSRLDVCMCVLTNRFVRRVPPLTNMLK 6
           ++NIF+  L+  D  MC+L+      + P+TN+ K
Sbjct: 60  VQNIFILNLAASDCMMCILS----LPITPITNVYK 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,291,435
Number of Sequences: 27780
Number of extensions: 146135
Number of successful extensions: 277
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)