Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1238
         (308 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.16 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   0.48 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   2.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   2.6  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   4.5  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.4 bits (53), Expect = 0.16
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 125 LGIRYLKNIFLYTLSRLDVCMCVLTNRFVRRV 30
           +G  +L  IFL     + VC+ + T+R +RR+
Sbjct: 28  VGFLFLILIFLSVAGNILVCVAIYTDRGLRRI 59


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 0.48
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 70  TSRRDRVYRKIFFKYRIPKA*RIRRP 147
           T R  ++ RKIF KY +P    +RRP
Sbjct: 327 THRMPQLIRKIFLKY-LPTILMMRRP 351


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 184 LRRVPIFLMKYRTQQMFTI 240
           L  VP+FLM+    QM TI
Sbjct: 67  LAGVPMFLMELSLGQMMTI 85


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 184 LRRVPIFLMKYRTQQMFTI 240
           L  VP+FLM+    QM TI
Sbjct: 120 LAGVPMFLMELSLGQMMTI 138


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 264 YYNKNQTRKIIFSCN 308
           YYN N  +K+ ++ N
Sbjct: 317 YYNNNNYKKLYYNIN 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,592
Number of Sequences: 438
Number of extensions: 2147
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)