Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1238
(308 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54250.2 68418.m06758 cyclic nucleotide-regulated ion channel... 31 0.21
At5g54250.1 68418.m06757 cyclic nucleotide-regulated ion channel... 31 0.21
At3g18930.2 68416.m02403 zinc finger (C3HC4-type RING finger) fa... 28 1.1
At3g18930.1 68416.m02402 zinc finger (C3HC4-type RING finger) fa... 28 1.1
At2g39180.1 68415.m04812 protein kinase family protein contains ... 27 3.4
At3g12430.1 68416.m01548 expressed protein ; expression supporte... 26 4.5
At1g74780.1 68414.m08664 nodulin family protein similar to nodul... 26 4.5
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont... 26 4.5
At4g21670.1 68417.m03139 double-stranded RNA-binding domain (DsR... 26 5.9
At3g12460.1 68416.m01551 hypothetical protein 26 5.9
At3g09550.1 68416.m01134 ankyrin repeat family protein contains ... 26 5.9
>At5g54250.2 68418.m06758 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC4) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc4) GI:4581203 from [Arabidopsis thaliana]
Length = 694
Score = 30.7 bits (66), Expect = 0.21
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -1
Query: 140 LIL*ALGIRYLKNIFLYTLSRLDVCMCVLTN 48
L++ A G+ ++ +FLYTLS D CMC+L +
Sbjct: 95 LLVCATGL-FVDPLFLYTLSVSDTCMCLLVD 124
>At5g54250.1 68418.m06757 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC4) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc4) GI:4581203 from [Arabidopsis thaliana]
Length = 694
Score = 30.7 bits (66), Expect = 0.21
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -1
Query: 140 LIL*ALGIRYLKNIFLYTLSRLDVCMCVLTN 48
L++ A G+ ++ +FLYTLS D CMC+L +
Sbjct: 95 LLVCATGL-FVDPLFLYTLSVSDTCMCLLVD 124
>At3g18930.2 68416.m02403 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 411
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -2
Query: 160 NTNAPDVLSFRP*VFDI*KIFSYTPYLVSMCACVYLPIALFGA 32
+T++ D+ SF P FD SY+PY + LP+ L+ A
Sbjct: 94 STSSSDLRSFSPFPFDSFHYSSYSPYGLDDSVIKTLPLFLYSA 136
>At3g18930.1 68416.m02402 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 411
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -2
Query: 160 NTNAPDVLSFRP*VFDI*KIFSYTPYLVSMCACVYLPIALFGA 32
+T++ D+ SF P FD SY+PY + LP+ L+ A
Sbjct: 94 STSSSDLRSFSPFPFDSFHYSSYSPYGLDDSVIKTLPLFLYSA 136
>At2g39180.1 68415.m04812 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 776
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = -3
Query: 165 SLTRMHRTSYPLGLRYSIFEKYFPIHPISSRCVHVCTYQSLCSARS 28
SL H + L S E YFP + VCT SLC S
Sbjct: 361 SLCSFHNLNICLRCGISCLEGYFPSSTCNPNADRVCTPCSLCQNSS 406
>At3g12430.1 68416.m01548 expressed protein ; expression supported
by MPSS
Length = 238
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 214 YRTQQMFTIDFHGEE*HTIIKIKPA 288
Y TQQ + +DF GEE I+ P+
Sbjct: 11 YATQQRYLVDFFGEEFIVIVTPDPS 35
>At1g74780.1 68414.m08664 nodulin family protein similar to
nodulin-like protein [Arabidopsis thaliana] GI:3329368,
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 533
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 290 FAGLIFIIVCYSSPWKSIVNIC*VRYFIRKIGT 192
+ G + + VCY S W + I + IR +GT
Sbjct: 419 YVGSVIVGVCYGSQWSLMPTITSELFGIRHMGT 451
>At1g58190.1 68414.m06605 leucine-rich repeat family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1784
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 308 IAAKYNFAGLIFII-VCYSSPWKSI 237
+AA Y + FI+ +C+ SPW+ +
Sbjct: 1745 LAATYGVTWITFIVFLCFDSPWRRV 1769
>At4g21670.1 68417.m03139 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 981
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = -3
Query: 198 WYPPEIRIPVHSLTRMHRTSYPLGLRYSIFEKYFPIHP 85
W+P E + + R YPL EK+ P HP
Sbjct: 628 WFPVEEEMDPAQIRRAVSKEYPLDSEMIHMEKHRPRHP 665
>At3g12460.1 68416.m01551 hypothetical protein
Length = 242
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 214 YRTQQMFTIDFHGEE 258
Y TQQ +++DF GEE
Sbjct: 11 YATQQRYSVDFFGEE 25
>At3g09550.1 68416.m01134 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 436
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 171 VHSLTRMHRTSYPLGLRYSIFEKYFPIHPISSRC 70
V++LTR H+T+Y + + E+ I I SRC
Sbjct: 170 VNALTRDHKTAYDIAEGLTHSEETAEIKEILSRC 203
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,644,609
Number of Sequences: 28952
Number of extensions: 128872
Number of successful extensions: 248
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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