Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1237
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    28   1.2  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    26   4.9  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    25   8.6  

>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 91  NKLISNPIQHPNHEFEEIEINVLKNRINKK 2
           NK I +  Q  NHE+E +    L N+IN +
Sbjct: 222 NKSIDSAPQEKNHEYEIVSPKSLSNKINNQ 251


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 109 IRGINLNKLISNPIQHPNHEFEEIEINVLKNRI 11
           IRG+ L+ +I+NP   P + +E+   +V  N +
Sbjct: 357 IRGLLLSGIINNPDVLPKNIYEDTSFSVFANLV 389


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 148 NEVSTDNKFFEFEIRGINLNKLISNPIQHPNHEFEEIEINVLKNRINK 5
           NEV++ NK+   EI  I  N+     ++  N E   + +N++ + I +
Sbjct: 435 NEVASQNKYSSTEISQITTNR----EVEEENEEILLVLLNIISSVIGR 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,395,409
Number of Sequences: 5004
Number of extensions: 18812
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)