Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1237
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80550.1 68414.m09443 pentatricopeptide (PPR) repeat-containi...    29   1.8  
At1g68260.1 68414.m07797 thioesterase family protein contains Pf...    29   3.2  
At1g68280.1 68414.m07799 thioesterase-related contains domain si...    28   5.5  
At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger) fa...    28   5.5  
At2g32460.1 68415.m03965 myb family transcription factor (MYB101...    27   7.3  
At1g35250.1 68414.m04371 thioesterase family protein contains Pf...    27   9.6  

>At1g80550.1 68414.m09443 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 448

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 127 KFFEFEIRGINLNKLISNPIQHPNH 53
           K+FEFEI    +N++I N    PNH
Sbjct: 93  KYFEFEISWALINRMIGNTESVPNH 117


>At1g68260.1 68414.m07797 thioesterase family protein contains Pfam
           profile: PF03061: thioesterase family protein
          Length = 190

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 151 FNEVSTDNKFFEFEIRGINLNKLISNPIQHPNHEF-EEIEIN 29
           F+EV    + +E +  G+  N + +N  QH  HEF E I IN
Sbjct: 53  FHEVELKVRDYELDQFGVVNNAVYANYCQHGRHEFLESIGIN 94


>At1g68280.1 68414.m07799 thioesterase-related contains domain
           similarity  with PF03061: thioesterase family protein
          Length = 188

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 151 FNEVSTDNKFFEFEIRGINLNKLISNPIQHPNHEF-EEIEIN 29
           F+EV    + +E +  G+  N + +N  QH  HEF E I IN
Sbjct: 51  FHEVELKVRDYELDQFGVVNNAVYANYCQHGMHEFLESIGIN 92


>At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 248

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 62  MLNWIRN*LIKIYPPNFKLKKFIIC 136
           M++W+ N + KI PP+     F++C
Sbjct: 220 MIDWVHNLIGKIPPPDIAFMAFLLC 244


>At2g32460.1 68415.m03965 myb family transcription factor (MYB101)
           identical to putative transcription factor MYB101
           GI:18087348 from [Arabidopsis thaliana]
          Length = 490

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 154 YFNEVSTDNKFFEFEIRGINLNKLISNPIQHPNHEFEEIEINVLKNRINKK 2
           Y N +  DN  F F +   + +   SN + +PNH  E I  N      NKK
Sbjct: 220 YNNSLENDNNQFGFSVPLSSSSS--SNEVCNPNHILEYISENSDTRNTNKK 268


>At1g35250.1 68414.m04371 thioesterase family protein contains Pfam
           profile PF03061: thioesterase family protein
          Length = 188

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 151 FNEVSTDNKFFEFEIRGINLNKLISNPIQHPNHEF-EEIEIN 29
           F+E+    + +E +  G+  N + +N  QH  HEF + I IN
Sbjct: 51  FHEIELKVRDYELDQFGVVNNAVYANYCQHGRHEFMDSIGIN 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,556,477
Number of Sequences: 28952
Number of extensions: 80044
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)