Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1236
         (570 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CE5CC Cluster: hypothetical protein TTHERM_0014...    32   8.2  
UniRef50_Q1ZQL2 Cluster: Putative signal transduction protein; n...    32   8.2  
UniRef50_Q4UFJ4 Cluster: SfiI-subtelomeric related protein famil...    32   8.2  

>UniRef50_UPI00006CE5CC Cluster: hypothetical protein
           TTHERM_00145910; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00145910 - Tetrahymena
           thermophila SB210
          Length = 252

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -1

Query: 246 GFCFQTP*LLKKMYRKIHHQFKILMDVWSDNFYL*FRIDRTLNVITFYLL-HVFLFCSNV 70
           G  F    L+K++   + +  K + D+    FY+  RI  T+++I F+LL H+  F    
Sbjct: 82  GLSFTLIDLIKQLNNSLKNP-KSVTDIKQSPFYITMRIGSTISLILFFLLDHILYFARLD 140

Query: 69  LMK 61
           LMK
Sbjct: 141 LMK 143


>UniRef50_Q1ZQL2 Cluster: Putative signal transduction protein; n=1;
           Vibrio angustum S14|Rep: Putative signal transduction
           protein - Vibrio angustum S14
          Length = 461

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 157 QFLFII*NRSNIECDNILFITCILILQQCINEVY 56
           ++LF+I N+  I  DN L++ C+L +  C+  VY
Sbjct: 237 EWLFVIQNQQKIHQDNSLYLRCLLYIFSCLICVY 270


>UniRef50_Q4UFJ4 Cluster: SfiI-subtelomeric related protein family
           member, putative; n=1; Theileria annulata|Rep:
           SfiI-subtelomeric related protein family member,
           putative - Theileria annulata
          Length = 895

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
 Frame = -2

Query: 335 WNTHFQY*QNICCLVINNYKNILY---SLYNETVFVFKRHDY*K-KCTEKFIINL 183
           +N ++ + +N+ C  I+ YK ILY   S Y E++  +K+H+    K  +KFI+++
Sbjct: 311 YNCYYNF-KNVICNEISYYKRILYKSQSKYPESLIFYKKHNITLIKFDDKFILHI 364


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 434,323,985
Number of Sequences: 1657284
Number of extensions: 7535286
Number of successful extensions: 14122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14113
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)