Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1236
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    28   1.1  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   1.9  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   7.8  

>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 186 FKILMDVWSDNFYL*FRIDRTLNVITFYLLHVFLFCSNVL 67
           F++LM VW DNF   F   + +++I   +  ++ F S +L
Sbjct: 810 FEVLMTVWCDNFVY-FSNFKNISIICIAMTKIYSFDSPLL 848


>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 200  KFIINLKF*WMSGLTIFI 147
            KF++ LKF W+S L +FI
Sbjct: 991  KFLLGLKFYWVSALILFI 1008


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = -2

Query: 329 THFQY*QNICCLVINNYKNILYSLYNETVFVFKRHDY*KKCTEKFIIN 186
           +H+ Y +  CC          + LYN+  F        K  T KF +N
Sbjct: 132 SHWYYNEKFCCWYSETMGMFKHDLYNDLTFQGSSCTAWKPWTYKFSLN 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,996,991
Number of Sequences: 5004
Number of extensions: 37047
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)