Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1236
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1068

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 505 SHI*NKHRFLIFFIF-FQS*KTCGKTILHVLYCVSVGFVSFH 383
           SH+     F+ +FI+ F+     G   ++ L C+++G ++FH
Sbjct: 771 SHLLPALAFIAYFIYVFKDRAVVGNPEVYPLLCIAIGGITFH 812


>SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 210 MYRKIHHQFKILMDVWSDNF 151
           MY + H +FKIL D+  DNF
Sbjct: 39  MYVRDHIRFKILTDIMDDNF 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,487,173
Number of Sequences: 59808
Number of extensions: 233794
Number of successful extensions: 357
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)