Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1236
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022978-9|AAG24185.1|  353|Caenorhabditis elegans Seven tm rece...    30   1.0  
AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine r...    30   1.0  
U42842-3|AAA83593.1|  449|Caenorhabditis elegans Intestinal acid...    29   3.1  

>AF022978-9|AAG24185.1|  353|Caenorhabditis elegans Seven tm
           receptor protein 256 protein.
          Length = 353

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 409 VSVGFVSFHFLYIFKQLLISLLLQCGIPIF 320
           ++   VS+ F  I KQL I+LL Q  IP+F
Sbjct: 235 IATAGVSYKFKTIQKQLFIALLFQTAIPVF 264


>AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 57 protein.
          Length = 280

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 481 FLIFFIFFQS*KTCGKTILHVLYCVSVGFVSFHFLYIFKQL 359
           F I F+ F + K   K  L ++YC  V  + FHF+ +  +L
Sbjct: 24  FYILFLIFIAKKVSLKPDLKLIYCRFVAEIFFHFVVVLNKL 64


>U42842-3|AAA83593.1|  449|Caenorhabditis elegans Intestinal acid
           phosphatase protein1 protein.
          Length = 449

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 299 CLVINNYKNILYSLYNETVFVF 234
           C  INN KN +YS ++ T++ F
Sbjct: 306 CTWINNLKNYIYSAHDTTIYAF 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,900,172
Number of Sequences: 27780
Number of extensions: 207303
Number of successful extensions: 444
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)