Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1235
(402 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 124 4e-30
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 70 2e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 54 6e-09
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 43 2e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 40 1e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 39 3e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 36 0.002
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.067
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.47
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 1.1
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 1.1
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 27 1.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.4
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 5.8
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po... 25 5.8
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr... 25 5.8
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 24 7.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 124 bits (300), Expect = 4e-30
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +1
Query: 76 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 255
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Score = 78.6 bits (185), Expect = 3e-16
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +3
Query: 252 QRGILTLKYPIEHGIVTNWDDMEKIWHYTFYNEPAVSP 365
+RGILTLKYPIEHGIV NWDDMEKIWH+TFYNE V+P
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAP 98
Score = 31.5 bits (68), Expect = 0.051
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +2
Query: 359 VAPEEHPVLLTEAP 400
VAPEEHP LLTEAP
Sbjct: 96 VAPEEHPCLLTEAP 109
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 69.7 bits (163), Expect = 2e-13
Identities = 30/53 (56%), Positives = 39/53 (73%)
Frame = +1
Query: 94 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 252
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQN 64
Score = 45.6 bits (103), Expect = 3e-06
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +3
Query: 255 RGILTLKYPIEHGIVTNWDDMEKIWHYTFYNE 350
RG+L ++ PIE GI+ NW DME+IW Y + ++
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQ 97
Score = 27.1 bits (57), Expect = 1.1
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 365 PEEHPVLLTEAP 400
PEEHP+LLTE P
Sbjct: 103 PEEHPLLLTEPP 114
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 54.4 bits (125), Expect = 6e-09
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Frame = +1
Query: 82 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQS 252
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
Score = 44.8 bits (101), Expect = 5e-06
Identities = 14/37 (37%), Positives = 28/37 (75%)
Frame = +3
Query: 255 RGILTLKYPIEHGIVTNWDDMEKIWHYTFYNEPAVSP 365
R +L +KYP+E+GI+ ++++M ++W YTF+ + + P
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDP 98
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 42.7 bits (96), Expect = 2e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 94 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 243
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
Score = 40.3 bits (90), Expect = 1e-04
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 14/53 (26%)
Frame = +3
Query: 267 TLKYPIEHGIVTNWDDMEKIW--------------HYTFYNEPAVSPPRNTQS 383
+L YPI HG + NWD ME+ W HY EP ++PP N ++
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENREN 141
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 40.3 bits (90), Expect = 1e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 79 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 180
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 25.8 bits (54), Expect = 2.5
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 264 LTLKYPIEHGIVTNWDDMEKIWHYTFYNEPAVSP 365
+ +K I +G V NWD +W Y + +P
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNP 96
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 38.7 bits (86), Expect = 3e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +1
Query: 79 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 249
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 35.9 bits (79), Expect = 0.002
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 94 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 189
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 31.1 bits (67), Expect = 0.067
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 279 PIEHGIVTNWDDMEKIWHYTF 341
P E +++NWD ME++ YTF
Sbjct: 86 PFERNVISNWDLMEQVLDYTF 106
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.1 bits (67), Expect = 0.067
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = -2
Query: 260 TSLLCASS----PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTT 96
TS C +S PT S P+ PT+ P P N S P PL+TT
Sbjct: 389 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATT 448
Query: 95 NAATSSS 75
N TS+S
Sbjct: 449 NCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 0.47
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 247 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 158
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.1 bits (57), Expect = 1.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 139 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 252
G+ PRA F ++ P H G+++ M KD G+E S
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMS 537
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 1.1
Identities = 23/58 (39%), Positives = 27/58 (46%)
Frame = -1
Query: 270 GSGYLFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 97
G G F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 26.6 bits (56), Expect = 1.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 292 PCSMGYLRVRIPLCSVPHLLHKSPSVPYRP 203
P + Y PL +VP +L PSV Y P
Sbjct: 349 PLQLSYAHYATPLPAVPTVLSGLPSVAYTP 378
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 1.4
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 239 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 123
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 5.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 94 LVVDNGSGMCKAGFAG 141
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 368
Score = 24.6 bits (51), Expect = 5.8
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 288 VRWGI*GSGYLFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARS 148
+ WG G+G + A+ + V H H ++A + D EH A S
Sbjct: 11 IHWGFLGAGSIAAVFAKDLVGVPERHKVQHEIVAVATRD-SEHRASS 56
>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 327
Score = 24.6 bits (51), Expect = 5.8
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = +3
Query: 249 EQRGILTLKYPIEHGIVTNWDDMEKIWHYTFYNEPAVSPPRNTQSCSL 392
EQ G K+ + G+V + + WHY+F N ++ C +
Sbjct: 148 EQMGNSIAKHLWDAGVVFSKKILSDDWHYSFSNRKDINVLELGSGCGI 195
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 24.2 bits (50), Expect = 7.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 126 LAHTGAIVYYQRGNFFVAHLELVF 55
L TGAIV Y G FF + L+F
Sbjct: 56 LFRTGAIVAYILGMFFTSSFMLLF 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,776,710
Number of Sequences: 5004
Number of extensions: 38061
Number of successful extensions: 122
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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