Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1235
(402 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 132 8e-32
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 128 2e-30
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 128 2e-30
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 5e-30
SB_56| Best HMM Match : Actin (HMM E-Value=0) 126 5e-30
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 125 1e-29
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 9e-10
SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 9e-10
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 52 2e-07
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 3e-07
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 33 0.087
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 32 0.20
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.27
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.27
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 31 0.35
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 31 0.46
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 31 0.46
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.46
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.61
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 30 0.61
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 29 1.1
SB_11622| Best HMM Match : TPR_2 (HMM E-Value=2.2) 29 1.9
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 28 2.5
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 28 2.5
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 28 2.5
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 28 2.5
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 28 2.5
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 28 2.5
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7) 28 3.3
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 5.7
SB_37927| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_34833| Best HMM Match : E6 (HMM E-Value=7.2) 26 10.0
SB_26308| Best HMM Match : Drf_FH1 (HMM E-Value=1.6) 26 10.0
SB_14615| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 10.0
SB_35722| Best HMM Match : CutA1 (HMM E-Value=8.3) 26 10.0
SB_21813| Best HMM Match : CutA1 (HMM E-Value=8.3) 26 10.0
SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08) 26 10.0
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 132 bits (320), Expect = 8e-32
Identities = 60/62 (96%), Positives = 62/62 (100%)
Frame = +1
Query: 70 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 249
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 250 SK 255
SK
Sbjct: 61 SK 62
Score = 80.6 bits (190), Expect = 4e-16
Identities = 33/38 (86%), Positives = 36/38 (94%)
Frame = +3
Query: 252 QRGILTLKYPIEHGIVTNWDDMEKIWHYTFYNEPAVSP 365
+RGILTLKYPIEHGIVTNWDDMEKIWH+TFYNE V+P
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 99
Score = 33.5 bits (73), Expect = 0.066
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 359 VAPEEHPVLLTEAP 400
VAPEEHPVLLTEAP
Sbjct: 97 VAPEEHPVLLTEAP 110
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 128 bits (309), Expect = 2e-30
Identities = 59/62 (95%), Positives = 61/62 (98%)
Frame = +1
Query: 70 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 249
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 250 SK 255
SK
Sbjct: 61 SK 62
Score = 80.6 bits (190), Expect = 4e-16
Identities = 33/38 (86%), Positives = 36/38 (94%)
Frame = +3
Query: 252 QRGILTLKYPIEHGIVTNWDDMEKIWHYTFYNEPAVSP 365
+RGILTLKYPIEHGIVTNWDDMEKIWH+TFYNE V+P
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 99
Score = 33.5 bits (73), Expect = 0.066
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 359 VAPEEHPVLLTEAP 400
VAPEEHPVLLTEAP
Sbjct: 97 VAPEEHPVLLTEAP 110
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 128 bits (309), Expect = 2e-30
Identities = 57/62 (91%), Positives = 61/62 (98%)
Frame = +1
Query: 70 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 249
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 250 SK 255
SK
Sbjct: 61 SK 62
Score = 80.6 bits (190), Expect = 4e-16
Identities = 33/38 (86%), Positives = 36/38 (94%)
Frame = +3
Query: 252 QRGILTLKYPIEHGIVTNWDDMEKIWHYTFYNEPAVSP 365
+RGILTLKYPIEHGIVTNWDDMEKIWH+TFYNE V+P
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 99
Score = 33.5 bits (73), Expect = 0.066
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 359 VAPEEHPVLLTEAP 400
VAPEEHPVLLTEAP
Sbjct: 97 VAPEEHPVLLTEAP 110
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 126 bits (305), Expect = 5e-30
Identities = 57/60 (95%), Positives = 60/60 (100%)
Frame = +1
Query: 76 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 255
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 62.9 bits (146), Expect = 9e-11
Identities = 29/36 (80%), Positives = 31/36 (86%)
Frame = +3
Query: 252 QRGILTLKYPIEHGIVTNWDDMEKIWHYTFYNEPAV 359
+RGILTLKYPIEHGIVTNWDDMEKI TF N PA+
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIMFETF-NSPAM 95
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 126 bits (305), Expect = 5e-30
Identities = 58/60 (96%), Positives = 60/60 (100%)
Frame = +1
Query: 76 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 255
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 80.6 bits (190), Expect = 4e-16
Identities = 33/38 (86%), Positives = 36/38 (94%)
Frame = +3
Query: 252 QRGILTLKYPIEHGIVTNWDDMEKIWHYTFYNEPAVSP 365
+RGILTLKYPIEHGIVTNWDDMEKIWH+TFYNE V+P
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 98
Score = 33.5 bits (73), Expect = 0.066
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 359 VAPEEHPVLLTEAP 400
VAPEEHPVLLTEAP
Sbjct: 96 VAPEEHPVLLTEAP 109
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 125 bits (302), Expect = 1e-29
Identities = 57/60 (95%), Positives = 60/60 (100%)
Frame = +1
Query: 76 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 255
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 80.6 bits (190), Expect = 4e-16
Identities = 33/38 (86%), Positives = 36/38 (94%)
Frame = +3
Query: 252 QRGILTLKYPIEHGIVTNWDDMEKIWHYTFYNEPAVSP 365
+RGILTLKYPIEHGIVTNWDDMEKIWH+TFYNE V+P
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 98
Score = 33.5 bits (73), Expect = 0.066
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 359 VAPEEHPVLLTEAP 400
VAPEEHPVLLTEAP
Sbjct: 96 VAPEEHPVLLTEAP 109
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 9e-10
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 79 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 195
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 59.7 bits (138), Expect = 9e-10
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 94 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 195
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 52.0 bits (119), Expect = 2e-07
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Frame = +1
Query: 64 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 234
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 235 GDEAQSK 255
GD A +K
Sbjct: 753 GDAAVAK 759
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 51.2 bits (117), Expect = 3e-07
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +3
Query: 246 TEQRGILTLKYPIEHGIVTNWDDMEKIWHYTFYNEPAVSPPRNTQ 380
++ R +L + YP+++GIV NWDDM+ +W YTF PRNT+
Sbjct: 62 SQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTK 106
Score = 50.0 bits (114), Expect = 7e-07
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +1
Query: 88 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEA 246
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEA 61
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -1
Query: 192 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 76
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 33.1 bits (72), Expect = 0.087
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 273 KYPIEHGIVTNWDDMEKIWHYTFYNEPAVSP 365
K+PI H IV +WD ME+ W + P
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEP 329
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 31.9 bits (69), Expect = 0.20
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 279 PIEHGIVTNWDDMEKIWHYTFYNE 350
P + G + NWD ++IW YTF E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 82 EVAALVVDNGSGMCKAGFAGDDAPRAV 162
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.27
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 167 GNTARGASSPAKPALHIPEPLSTT 96
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.27
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 167 GNTARGASSPAKPALHIPEPLSTT 96
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 31.1 bits (67), Expect = 0.35
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 115
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 213 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 30.7 bits (66), Expect = 0.46
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 115
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 408 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 30.7 bits (66), Expect = 0.46
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 115
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 271 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 30.7 bits (66), Expect = 0.46
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 115
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 249 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 30.7 bits (66), Expect = 0.46
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 115
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 30.7 bits (66), Expect = 0.46
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 115
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 30.7 bits (66), Expect = 0.46
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 115
L +C V+LSH + H M D +HG RS SCET L T
Sbjct: 125 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 0.61
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 167 GNTARGASSPAKPALHIPEPLSTT 96
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 30.3 bits (65), Expect = 0.61
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 115
L +C ++LSH + H M D +HG RS SCET L T
Sbjct: 173 LTCICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 29.5 bits (63), Expect = 1.1
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = -1
Query: 258 LFALCLISYI--RVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQ 94
+FA CL + V+LSH + H L A +HG R+ SCET L H A + +
Sbjct: 461 IFATCLACKVMKHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNK 519
Query: 93 RGNFFVAHLE 64
G V L+
Sbjct: 520 HGQVDVLLLD 529
>SB_11622| Best HMM Match : TPR_2 (HMM E-Value=2.2)
Length = 299
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 255 RGILTLKYPIEHGIVTNWDDMEKIWHYTFYNEPAVSPPRNTQSCSLRLP 401
+GI+ + ++ + +DD EKI+ Y FY E ++ P + S +LP
Sbjct: 16 KGIVWENWALDKDVFCGYDD-EKIYTYIFYKE-TITGPHCIMAGSTKLP 62
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 115
L +C ++LSH + H L A +HG R +SCET L T
Sbjct: 242 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 288
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 167 GNTARGASSPAKPALHIPEPLSTT 96
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 28.3 bits (60), Expect = 2.5
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = -3
Query: 319 SMSSQLVTIPCSMGYLRVRIPLCSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTRREEHHL 140
+++SQ VT M R +PL S P + KSP V + P PD + R E HH
Sbjct: 792 ALTSQQVTSSHDMP--RTSMPLVSYPPHMKKSPFVVHHP--PDSAS--RHGNQAPEAHH- 844
Query: 139 LRNRPCTYRS 110
+ P +Y+S
Sbjct: 845 --HEPGSYKS 852
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 167 GNTARGASSPAKPALHIPEPLSTT 96
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 115
L +C ++LSH + H L A +HG R +SCET L T
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 115
L +C ++LSH + H L A +HG R +SCET L T
Sbjct: 1641 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1687
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 115
L +C ++LSH + H L A +HG R +SCET L T
Sbjct: 669 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 715
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 115
L LC + ++LSH + H L +HG R +SCET L T
Sbjct: 854 LTCLCCKTMEHIVLSHLNKH-LSRFNILSNAQHGFRQGLSCETQLVLT 900
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 115
L +C ++LSH + H L A +HG R +SCET L T
Sbjct: 224 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 270
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 115
L +C ++LSH + H L A +HG R +SCET L T
Sbjct: 1079 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1125
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 115
L +C ++LSH + H L A +HG R +SCET L T
Sbjct: 22 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 68
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 258 LFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 115
L +C ++LSH + H L A +HG R +SCET L T
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Frame = -3
Query: 310 SQLVTIPCSMGYLRVRIPLCSVPHLLHKS---------PSVPYRPSRPDGGAFP 176
S+ ++IP G+ R L P L H S P+ PY PS+ G +FP
Sbjct: 3759 SKPISIPSRDGHARAATSLPGSPQLSHLSGRFSSDDVSPTPPYSPSQKQGFSFP 3812
>SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)
Length = 186
Score = 27.9 bits (59), Expect = 3.3
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = -3
Query: 331 CQIFSMSSQLVTIPCSMG--YLRVRIPLCSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 158
C + ++V CS Y+ V +CS + H+ PSR D FP + R
Sbjct: 102 CSCRCVPHRMVMSMCSPSRVYVDVSPIVCSCRCVPHRVLMSMCSPSRADVDVFPITCSRR 161
Query: 157 REEHHLLRNRPCTYRSH 107
HH+L + + R+H
Sbjct: 162 CVFHHVLMSMCSSSRAH 178
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 182 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 72
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 238 LLHKSPSVPYRPS--RPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPT 92
LL +S P +P+ RP GGA P++ ++ + N+ T+ PT
Sbjct: 92 LLDESTEAPPQPATIRPQGGALPQTPVKGKQNKRVSDNKEFTHAMQARRPT 142
>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 27.5 bits (58), Expect = 4.3
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -3
Query: 244 PHLLHKSPSVPYRPSRPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPTRQLLRR 74
P L +P + RPS + S + LL RP TYR+ LP+ LL +
Sbjct: 131 PLYLPSAPLLTERPSTYRAPLYLPSAPSTYRAPLLLTERPSTYRAPLYLPSTPLLTK 187
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 88 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 192
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_37927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 301 LTGMTWRRFGIIPSTMSLLCRPRGTPSP 384
+T T RF + + +L+C RG PSP
Sbjct: 725 ITSFTAPRFAQLNGSTTLICLTRGIPSP 752
>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 26.6 bits (56), Expect = 7.6
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 67 KMCDEEVAALVVDNG-SGMCKAGFAGD 144
++CD++ + +N MCKAG+ GD
Sbjct: 487 RLCDKDAVCRLENNAIKCMCKAGYTGD 513
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 26.6 bits (56), Expect = 7.6
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = -2
Query: 248 CASSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAKP 129
C S P F +P P W LP+ E N G SS A P
Sbjct: 2229 CESDPVDSLFSEVP---PEWSTLPSPEQNAFGGDSSWASP 2265
>SB_34833| Best HMM Match : E6 (HMM E-Value=7.2)
Length = 135
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 142 LLRNRPCTYRSHCLLP 95
L R R C YRSH LLP
Sbjct: 52 LFRGRYCQYRSHNLLP 67
>SB_26308| Best HMM Match : Drf_FH1 (HMM E-Value=1.6)
Length = 184
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Frame = -2
Query: 188 RGLPTIE----GNTARGASSPAKPALHIPEPLSTTNAATSSS 75
RG P I NT+RG PA P + PL+ +S+S
Sbjct: 119 RGTPPIREDGYANTSRGDRGPASPHSFLSSPLNLRKQPSSAS 160
>SB_14615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 26.2 bits (55), Expect = 10.0
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 170 EGNTARGASSP-AKPALHIPEPLSTTNAATSS 78
+G T R SS A+P L++P P S T ++ SS
Sbjct: 79 DGGTNRTRSSASAEPTLNLPSPPSKTPSSASS 110
>SB_35722| Best HMM Match : CutA1 (HMM E-Value=8.3)
Length = 171
Score = 26.2 bits (55), Expect = 10.0
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 170 EGNTARGASSP-AKPALHIPEPLSTTNAATSS 78
+G T R SS A+P L++P P S T ++ SS
Sbjct: 79 DGGTNRTRSSASAEPTLNLPSPPSKTPSSASS 110
>SB_21813| Best HMM Match : CutA1 (HMM E-Value=8.3)
Length = 200
Score = 26.2 bits (55), Expect = 10.0
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 170 EGNTARGASSP-AKPALHIPEPLSTTNAATSS 78
+G T R SS A+P L++P P S T ++ SS
Sbjct: 79 DGGTNRTRSSASAEPTLNLPSPPSKTPSSASS 110
>SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08)
Length = 240
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 390 VSRTGCSSGATQQAHCRRYNAKSSPCHPS 304
V+R+ C + CR YN ++PC S
Sbjct: 50 VTRSSCQARCFMNNLCRSYNYNTTPCQLS 78
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,263,677
Number of Sequences: 59808
Number of extensions: 334332
Number of successful extensions: 1065
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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