Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1235
         (402 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.11 
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   4.0  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   4.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   5.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.9  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   9.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   9.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.6 bits (56), Expect = 0.11
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = -1

Query: 387 SRTGCSSGATQQAHCRRYNAKSSPCHP 307
           S T  S   T QAH R Y A SS C P
Sbjct: 55  SGTRSSESLTAQAHHRLYPAFSSSCDP 81


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 258 LFALCLISYIRV 223
           LF LC++SY+ V
Sbjct: 8   LFTLCIVSYMMV 19


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 115 GMCKAGFAGD 144
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 174 DRGEHGARSIISCETGLA 121
           D GEH   ++   E GLA
Sbjct: 130 DPGEHNGDTVTDVEAGLA 147


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 174 DRGEHGARSIISCETGLA 121
           D GEH   ++   E GLA
Sbjct: 125 DPGEHNGDTVTDVEAGLA 142


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = +3

Query: 171 DRGKAPPSGRDGRYGTEGLLCRR*GTEQRGILTLKYPIEHGI 296
           D  K PPS R  R        R  G   RG    K  + H I
Sbjct: 403 DPAKFPPSFRISRVAAYNTYGRNAGLRYRGPKQNKPKVLHAI 444


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 297 VTNWDDMEKIWHYTFYNEPAVSPPRN 374
           V +W +   I +YT +NE + +  R+
Sbjct: 272 VESWVNTSVIRNYTLFNENSEAAARS 297


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 346 MSLLCRPRGTPSPAH 390
           + LLC  +G P P H
Sbjct: 230 LPLLCPAQGFPVPVH 244


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 114 GAIVYYQRGNFFVAHLELVF 55
           G +VY   G+F++  L ++F
Sbjct: 246 GYVVYSALGSFYIPMLVMLF 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,796
Number of Sequences: 438
Number of extensions: 2944
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)