Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1234
         (380 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    41   0.007
UniRef50_Q0S208 Cluster: Polyribonucleotide nucleotidyltransfera...    33   1.8  
UniRef50_A4I495 Cluster: Putative uncharacterized protein; n=3; ...    32   3.2  
UniRef50_A7T0K2 Cluster: Predicted protein; n=4; Nematostella ve...    31   5.5  
UniRef50_A1D140 Cluster: Plasma membrane ferric-chelate reductas...    31   7.3  
UniRef50_A0VUL4 Cluster: Glycosyl transferase, group 1; n=1; Din...    31   9.6  
UniRef50_Q2NPD0 Cluster: Putative uncharacterized protein; n=1; ...    31   9.6  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 41.1 bits (92), Expect = 0.007
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = -2

Query: 379 WVDELRAYLGVRWLLEPIDIYDVNAPPTLRY 287
           WVDEL A+L +     P  +YDVNAPPT RY
Sbjct: 159 WVDELTAHLVLSGYWSPRHLYDVNAPPTSRY 189


>UniRef50_Q0S208 Cluster: Polyribonucleotide nucleotidyltransferase;
           n=18; Actinomycetales|Rep: Polyribonucleotide
           nucleotidyltransferase - Rhodococcus sp. (strain RHA1)
          Length = 757

 Score = 33.1 bits (72), Expect = 1.8
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 337 LEPIDIYDVNAPPTLRYSSKVSSIVITAPRLSNRNALLLHGRNRAGRW 194
           L P D+YDV A      S++++ +  + P    R AL+    N+AG+W
Sbjct: 135 LNPQDLYDVVAINAASASTQIAGLPFSGPVGGVRVALITSDENKAGQW 182


>UniRef50_A4I495 Cluster: Putative uncharacterized protein; n=3;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania infantum
          Length = 578

 Score = 32.3 bits (70), Expect = 3.2
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = -2

Query: 367 LRAYLGVRWLL-EPIDIYDVNAPPTLRYSSKVSSIVITAPRLSNRNALLLHGRNRAGRWY 191
           LRA L   W   + +D Y V  PP     S ++  V T P L     L  H R   G   
Sbjct: 450 LRAPLAEMWQSRQAVDAYHV--PPAQERVSLLAQKVATRPMLRTPTPLQ-HDRQHGGTGS 506

Query: 190 LPTRTHRVLP 161
            P R HR++P
Sbjct: 507 EPLRPHRIVP 516


>UniRef50_A7T0K2 Cluster: Predicted protein; n=4; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 398

 Score = 31.5 bits (68), Expect = 5.5
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -2

Query: 370 ELRAYLGVRWLLEPIDIYDVNAPPTLRYSSKVSSIVITAPRLSNRNALLLHGRNRA 203
           EL    G  W  + ++ +D+N  P    S   SS +   P+L+++ A++ H  NRA
Sbjct: 159 ELFQKQGSGWQFDQVEYFDINIDPFEPLSG--SSYIPLPPKLASKKAVINHFANRA 212


>UniRef50_A1D140 Cluster: Plasma membrane ferric-chelate reductase
           (Fre2), putative; n=3; Trichocomaceae|Rep: Plasma
           membrane ferric-chelate reductase (Fre2), putative -
           Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
           181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
           3700 / NRRL 181))
          Length = 743

 Score = 31.1 bits (67), Expect = 7.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 298 WVAHLRRRCLWAPVTT*HPNRL 363
           W  HLR +CL +P  T HPN L
Sbjct: 558 WTRHLRDQCLQSPTRTIHPNIL 579


>UniRef50_A0VUL4 Cluster: Glycosyl transferase, group 1; n=1;
           Dinoroseobacter shibae DFL 12|Rep: Glycosyl transferase,
           group 1 - Dinoroseobacter shibae DFL 12
          Length = 1302

 Score = 30.7 bits (66), Expect = 9.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 331 PIDIYDVNAPPTLRYSSKVSSIVITAPRLSNRNALLLHGRNR 206
           P+ +YD  APP L  SSK   +V      +  + +L +GR+R
Sbjct: 418 PVIVYDHGAPPELVVSSKTGQVVPFGDIQAVADQVLAYGRDR 459


>UniRef50_Q2NPD0 Cluster: Putative uncharacterized protein; n=1;
           Xanthomonas phage OP2|Rep: Putative uncharacterized
           protein - Xanthomonas phage OP2
          Length = 494

 Score = 30.7 bits (66), Expect = 9.6
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 298 TLRYSSKVSSIVITAPRLSNRNALLLHGRNRAGRWYLPTRTHRV 167
           TL   S VSS  +    L+N NALL +G    G++   T T+ V
Sbjct: 311 TLALRSPVSSAGVRVDNLANANALLSNGYTYLGKYASATNTYTV 354


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 442,382,714
Number of Sequences: 1657284
Number of extensions: 9135463
Number of successful extensions: 18598
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18597
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14868845845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)