Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1234
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    27   0.75 
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    27   0.99 
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    23   1.7  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   3.0  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   4.0  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   4.0  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    24   7.0  
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    24   9.3  

>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 27.5 bits (58), Expect = 0.75
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 10   APVFESQANFSPIFLMKYIFNKCSRLTSTVKEQHRVIKI 126
            A  F    NF+ + L+ ++++K S      +E+H ++KI
Sbjct: 1146 AEEFAEHTNFNKVELLDFVYSKLSSTIWENREEHDLLKI 1184


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 27.1 bits (57), Expect = 0.99
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 337 LEPIDIYDVNAPPTLRYSSKVSSIVITAPRLSNRNALLLHGRN 209
           ++PI  YD++  P L   +    +V+T   L + N++ LHG N
Sbjct: 24  VKPIH-YDLSLYPDLETFTYGGKVVVTLDVLEDSNSITLHGIN 65


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 23.4 bits (48), Expect(2) = 1.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 119 ITRCCSFTVEVNREHLLNMYFIRKIGEKLAWDSNTGAS 6
           ITR  ++ V +N   L +M F+  + E +AW  ++ +S
Sbjct: 447 ITRNLNWNVYLNFIILFSMCFVCAVVEGIAWRGHSRSS 484



 Score = 21.0 bits (42), Expect(2) = 1.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 260 NGAPPFKPKRIT 225
           +GAPP K  RIT
Sbjct: 437 SGAPPLKRSRIT 448


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 22  ESQANFSPIFLMKYIFNKCSRLTSTV 99
           ES+  F+P+ L   + N CS  +STV
Sbjct: 349 ESELLFNPMELFPQVINSCSPSSSTV 374


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +3

Query: 120 KNQTRKIIICIITGGRT 170
           K+  +K+++CII+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -1

Query: 278 GLKYSYNGAPPFKPKRI-TASRQ 213
           GL Y+ NG  P  PKRI   SRQ
Sbjct: 10  GLLYTTNGVSPTPPKRIPVPSRQ 32


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 45  NFSNEIHIQQMFTIDFHGEG 104
           +++  +H+Q   T+DFH +G
Sbjct: 107 DWTKSVHLQTDRTVDFHSQG 126


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 262 ITAPRLSNRNALLLHGRNRAGRWYLP 185
           + AP LSN +    H R+R+  W+LP
Sbjct: 98  LLAPPLSNGSG---HARSRSHAWWLP 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,784,664
Number of Sequences: 5004
Number of extensions: 37427
Number of successful extensions: 82
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)