Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1234
         (380 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974...    29   1.2  
08_02_0319 - 15742524-15742567,15742691-15742825,15742922-157430...    27   3.8  
10_01_0340 - 3734116-3734178,3734212-3734300,3734785-3734844,373...    27   5.0  
03_01_0347 - 2730242-2730425,2730541-2730692,2730782-2730940,273...    27   6.6  

>09_06_0061 +
           20596360-20596618,20597039-20597158,20597329-20597462,
           20597578-20597730,20597816-20597927,20598022-20598352,
           20598524-20598737,20598842-20598931,20599669-20599924,
           20600029-20600141,20600733-20600831,20600915-20600980,
           20601018-20601167,20601278-20601368,20601710-20601749,
           20603888-20605247,20605478-20605507,20605834-20605885,
           20606264-20606397,20606513-20606665,20607089-20607202
          Length = 1356

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = -2

Query: 229 LLLHGRNRAG---RWYLPTRTHRVLPPVIMQII 140
           LLL  R+RAG   + Y PTRT RV  P++ +II
Sbjct: 609 LLLFLRSRAGGILKEYYPTRTERVDKPLVDEII 641


>08_02_0319 -
           15742524-15742567,15742691-15742825,15742922-15743020,
           15746200-15746325,15746639-15746728,15746860-15746875
          Length = 169

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 243 QTETHYCFTAEIGQGGGTYPRGLTESY 163
           Q+ +HY +T  IGQ GG + +G  + Y
Sbjct: 54  QSMSHYIYTTSIGQAGGCH-KGKVKGY 79


>10_01_0340 -
           3734116-3734178,3734212-3734300,3734785-3734844,
           3736188-3736245,3736507-3736893,3736942-3737615,
           3739154-3739203,3739903-3739943,3740721-3740860,
           3740903-3741183,3741405-3741613
          Length = 683

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 379 WVDELRAYLGVRWLLEPIDIYDVNAPPTLRYSSKVSSIVITAP 251
           WV ++R  L V+ L E +D++DV A  +L  +S+   I   AP
Sbjct: 120 WVSDIRDGLSVQALGEYLDLWDVIAGISLDPASRDEMIWKAAP 162


>03_01_0347 -
           2730242-2730425,2730541-2730692,2730782-2730940,
           2734144-2734618,2734713-2734775,2734870-2735078
          Length = 413

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 93  GSQS*TFVEYVFH*KNW*KIGLGLEHWCI 7
           G QS  F  ++ H     +IG GL+ WCI
Sbjct: 271 GIQSAVFTAFMQHKPEDWRIGFGLKFWCI 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,280,651
Number of Sequences: 37544
Number of extensions: 264696
Number of successful extensions: 507
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)