Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1234
(380 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58795| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_56938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.2
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13) 27 3.9
SB_19080| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-08) 27 3.9
SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55) 27 3.9
SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34) 27 5.2
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 27 5.2
SB_37547| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_28906| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_15027| Best HMM Match : KIX (HMM E-Value=2) 26 9.0
SB_47998| Best HMM Match : YTV (HMM E-Value=3.1) 26 9.0
SB_43552| Best HMM Match : C2 (HMM E-Value=7.4e-11) 26 9.0
>SB_58795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 214 RNRAGRWYLPTRTHRVLPPV 155
RN G++Y P HR+LPP+
Sbjct: 88 RNVLGKYYQPKTRHRLLPPI 107
>SB_56938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 653
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = -2
Query: 334 EPIDIYDVNAPPTLRYSSKVSSIVITAPRLSNRNALL 224
+P++ +D+N P R+S SS + P+L+++ A++
Sbjct: 145 DPVEYFDINIDPFERFSG--SSYIPLPPKLASKKAII 179
>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
Length = 1287
Score = 27.5 bits (58), Expect = 3.9
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2
Query: 128 NPQNYNLHNYWW 163
NP NY++HNY W
Sbjct: 401 NPDNYSVHNYCW 412
>SB_19080| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-08)
Length = 281
Score = 27.5 bits (58), Expect = 3.9
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 76 CSRLTSTVKEQHRVIKIKPAKL*FA*LLVVGLCESAWVGTTALPYFCREAVMRFGLKGG 252
C+R+ +++ + K + + L A LL+ GL + PY C + VM FGL G
Sbjct: 221 CNRVAEATRDRAAIAKRRKSSL--AMLLLYGLFVLCYT-----PYVCVQLVMLFGLDNG 272
>SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55)
Length = 1087
Score = 27.5 bits (58), Expect = 3.9
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -1
Query: 323 HLRRKCATHLEI*F*GLKYSYNGAPPFKPKRITASRQK*GRAVVPTHADSQSPT 162
+L RKC H++ L+Y++ G P P IT + A P+ QS T
Sbjct: 194 NLFRKCVNHVQKRASSLQYAHWGPAPDLPSSITLTISPQKTATKPSTFQPQSST 247
>SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34)
Length = 686
Score = 27.1 bits (57), Expect = 5.2
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +3
Query: 9 CTSVRVPGQFFTNFSNEIHIQQMFTIDFHGE--GTTSCNKNQTRK--IIICIITGGR 167
C ++ +P + TNF + TIDFH + GT+ N + + I + T GR
Sbjct: 343 CRALGIPTRSVTNFKSAHDTDSSMTIDFHFDEAGTSMFGMNLSLRDQIFPLVTTDGR 399
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = -2
Query: 376 VDELRAYLGVRWLLEPIDIYDVNAPPTLRYSSKVSSIVITAPRLSNRNA 230
+ +LR + ++W E +++ N +Y ++ + + RLS NA
Sbjct: 484 IAQLREEMKLKWKSERKSLFNKNKNKVKQYEENITELEMKVSRLSTENA 532
>SB_37547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 55 MKYIFNKCSRLTSTVKEQH 111
MK + NK S LTS KEQH
Sbjct: 837 MKSLVNKLSSLTSLQKEQH 855
>SB_28906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1191
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 325 DIYDVNAPPTLRYSSKVSSIVITAP 251
D+Y + APPTL S +S T+P
Sbjct: 555 DVYFIQAPPTLPASCDISLPAYTSP 579
>SB_15027| Best HMM Match : KIX (HMM E-Value=2)
Length = 547
Score = 26.2 bits (55), Expect = 9.0
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -2
Query: 229 LLLHGRNRAGRWYLPTRTHR 170
L+++G+ RAGR+YL + H+
Sbjct: 246 LIINGKPRAGRFYLHPKIHK 265
>SB_47998| Best HMM Match : YTV (HMM E-Value=3.1)
Length = 245
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 355 LGVRWLLEPIDIYDVNAPPTLRYSSKVSSIVITAPRL 245
L +R EPI Y V P S +SS +T P +
Sbjct: 43 LAIRDTSEPISSYHVTVPAIRDISEPISSYHVTVPAI 79
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 355 LGVRWLLEPIDIYDVNAPPTLRYSSKVSSIVITAPRL 245
L +R EPI Y V P S +SS +T P +
Sbjct: 128 LAIRDTSEPISSYHVTVPAIRDISEPISSYHVTVPAI 164
>SB_43552| Best HMM Match : C2 (HMM E-Value=7.4e-11)
Length = 128
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 226 LLHGRNRAGRWYLPTRTHRV 167
+LH ++ +GRWY +RT RV
Sbjct: 31 VLHMQDNSGRWYEFSRTERV 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,588,898
Number of Sequences: 59808
Number of extensions: 287218
Number of successful extensions: 484
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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