Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1234
         (380 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08680.2 68416.m01009 leucine-rich repeat transmembrane prote...    26   7.4  
At3g08680.1 68416.m01008 leucine-rich repeat transmembrane prote...    26   7.4  
At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containi...    26   7.4  
At5g20420.1 68418.m02428 SNF2 domain-containing protein / helica...    26   9.7  

>At3g08680.2 68416.m01009 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069
           Eukaryotic protein kinase domain, PF00560 leucine Rich
           Repeat (5 copies)
          Length = 640

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 122 FITRCCSFTVEVNREHLLNMYFIRKIGEKLAWDS 21
           F++RC S  +E +++ LL    +     KL W+S
Sbjct: 16  FVSRCLSADIESDKQALLEFASLVPHSRKLNWNS 49


>At3g08680.1 68416.m01008 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069
           Eukaryotic protein kinase domain, PF00560 leucine Rich
           Repeat (5 copies)
          Length = 640

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 122 FITRCCSFTVEVNREHLLNMYFIRKIGEKLAWDS 21
           F++RC S  +E +++ LL    +     KL W+S
Sbjct: 16  FVSRCLSADIESDKQALLEFASLVPHSRKLNWNS 49


>At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587, post-transcriptional control of
           chloroplast gene expression CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 918

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 122 KSNPQNYNLHNYWW*DSVSPRG*VPPPCPISAV 220
           + NP NYN   Y    S SPRG  PPP  ++ V
Sbjct: 82  RQNP-NYNHRPYG--ASSSPRGSAPPPSSVATV 111


>At5g20420.1 68418.m02428 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to SP|Q9U7E0
           Transcriptional regulator ATRX homolog {Caenorhabditis
           elegans}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1261

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 42  TNFSNEIHIQQMFTIDFHGEGTTSCNKNQTRKIIICI 152
           TNF+ ++H      +   GEG TS N+   R++ +C+
Sbjct: 526 TNFAFKLHGDMEKNLSEDGEGETSENEMLWREMELCL 562


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,476,155
Number of Sequences: 28952
Number of extensions: 202120
Number of successful extensions: 362
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)