Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1233
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   156   2e-39
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   155   2e-39
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    99   1e-22
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    73   2e-14
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   4.9  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   6.5  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   6.5  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   6.5  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  156 bits (378), Expect = 2e-39
 Identities = 63/85 (74%), Positives = 80/85 (94%)
 Frame = +1

Query: 1   AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 180
           +++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D VL+RIR+
Sbjct: 69  SIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRR 128

Query: 181 LADQCTGLQGFLIFHSFGGGTGSGL 255
           +AD C+GLQGFL+FHSFGGGTGSGL
Sbjct: 129 MADNCSGLQGFLVFHSFGGGTGSGL 153



 Score = 64.1 bits (149), Expect = 9e-12
 Identities = 26/36 (72%), Positives = 35/36 (97%)
 Frame = +3

Query: 258 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 365
           +LL+ERL+++YGKKS L+F++YPAPQVST+VVEPYN
Sbjct: 155 ALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYN 190


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  155 bits (377), Expect = 2e-39
 Identities = 65/84 (77%), Positives = 78/84 (92%)
 Frame = +1

Query: 1   AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 180
           +++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D+IR+
Sbjct: 65  SIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRR 124

Query: 181 LADQCTGLQGFLIFHSFGGGTGSG 252
           +AD C+GLQGFL+FHSFGGGTGSG
Sbjct: 125 IADNCSGLQGFLVFHSFGGGTGSG 148



 Score = 62.9 bits (146), Expect = 2e-11
 Identities = 26/36 (72%), Positives = 35/36 (97%)
 Frame = +3

Query: 258 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 365
           +LL+ERL+++Y KKSKL+F++YPAPQVST+VVEPYN
Sbjct: 151 ALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYN 186


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =   99 bits (238), Expect = 1e-22
 Identities = 44/85 (51%), Positives = 59/85 (69%)
 Frame = +1

Query: 1   AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 180
           AV VDLEP  +D V++G +  LF P+ +I G+  A N +A+GHYT G E+ D VLD +R+
Sbjct: 63  AVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRR 122

Query: 181 LADQCTGLQGFLIFHSFGGGTGSGL 255
            A+ C  LQGF + HS GGGTGSG+
Sbjct: 123 EAEACDALQGFQLTHSLGGGTGSGM 147



 Score = 35.1 bits (77), Expect = 0.005
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 258 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 365
           +LL+ ++  +Y  +    F++ PAP+ S  VVEPYN
Sbjct: 149 TLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYN 184


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 72.9 bits (171), Expect = 2e-14
 Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
 Frame = +1

Query: 1   AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED--AANNYARGHYTIGKEIVDLVLDRI 174
           A+ +DLEP VV+ + + TY  L++PE ++  K    A NN+A G Y+  + I + ++D I
Sbjct: 64  AILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMI 122

Query: 175 RKLADQCTGLQGFLIFHSFGGGTGSGL 255
            + AD    L+GF + HS  GGTGSGL
Sbjct: 123 DREADGSDSLEGFSLLHSIAGGTGSGL 149



 Score = 33.1 bits (72), Expect = 0.019
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 258 SLLMERLSVDYGKKSKLEFAIYPAPQ-VSTAVVEPYN 365
           S L+ERL+  Y KK    ++++P  Q VS  VV+PYN
Sbjct: 151 SFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYN 187


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 297 SCRSQRRDAPSIRK*PRAGTSTEGVEDQESLQTGTLVSELADSVQN 160
           S +       SIR   R+ +S+ G + Q S+Q+GT    ++D  ++
Sbjct: 98  SSQKSSNSRKSIRSQSRSRSSSVGSDSQASIQSGTNSEVVSDDEED 143


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/44 (22%), Positives = 26/44 (59%)
 Frame = +3

Query: 249 WVTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNFYSHH 380
           +V+ L    + V +GK  K++  +  AP++  ++ +P +F +++
Sbjct: 757 FVSQLRRMAVIVKHGKFKKMDAYVKGAPEIMPSICKPESFPANY 800


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 94  KEDAANNYARGHYTIGKEIVDLV 162
           +E  ANN+ RGH  I K+  D +
Sbjct: 599 RERKANNFFRGHIEIDKKTKDFL 621


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 281  GETLHQ*GSNPEPVPPPKEWKIRNPCRPVHWSASLRILSKTKSTISFP 138
            GET H   ++   VPP ++    NP  PV   + +   S+  S+ + P
Sbjct: 932  GETYHPPTASGTRVPPVQQPSHPNPYTPVAPQSPVAAASRISSSPNMP 979


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,740,464
Number of Sequences: 5004
Number of extensions: 35163
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)