Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1233
(425 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 167 2e-42
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 167 2e-42
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 167 2e-42
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 167 2e-42
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 167 4e-42
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 167 4e-42
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 160 3e-40
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 108 1e-24
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 107 4e-24
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 107 4e-24
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 107 4e-24
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 105 1e-23
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 104 2e-23
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 104 2e-23
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 104 3e-23
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 100 5e-22
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 71 2e-13
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 71 3e-13
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ... 30 0.75
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016... 29 1.00
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 29 1.3
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 28 2.3
At5g59380.1 68418.m07441 methyl-CpG-binding domain-containing pr... 28 3.0
At4g10440.1 68417.m01716 dehydration-responsive family protein s... 27 4.0
At1g33170.1 68414.m04096 dehydration-responsive family protein s... 27 4.0
At4g37190.1 68417.m05265 expressed protein 27 5.3
At5g56020.1 68418.m06990 expressed protein 27 7.0
At1g64770.1 68414.m07344 expressed protein 27 7.0
At1g06470.2 68414.m00686 phosphate translocator-related low simi... 27 7.0
At1g06470.1 68414.m00685 phosphate translocator-related low simi... 27 7.0
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 26 9.3
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 167 bits (407), Expect = 2e-42
Identities = 76/85 (89%), Positives = 82/85 (96%)
Frame = +1
Query: 1 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 180
AVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK 124
Query: 181 LADQCTGLQGFLIFHSFGGGTGSGL 255
LAD CTGLQGFL+F++ GGGTGSGL
Sbjct: 125 LADNCTGLQGFLVFNAVGGGTGSGL 149
Score = 68.1 bits (159), Expect = 2e-12
Identities = 30/36 (83%), Positives = 34/36 (94%)
Frame = +3
Query: 258 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 365
SLL+ERLSVDYGKKSKL F +YP+PQVST+VVEPYN
Sbjct: 151 SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYN 186
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 167 bits (407), Expect = 2e-42
Identities = 76/85 (89%), Positives = 82/85 (96%)
Frame = +1
Query: 1 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 180
AVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK 124
Query: 181 LADQCTGLQGFLIFHSFGGGTGSGL 255
LAD CTGLQGFL+F++ GGGTGSGL
Sbjct: 125 LADNCTGLQGFLVFNAVGGGTGSGL 149
Score = 68.1 bits (159), Expect = 2e-12
Identities = 30/36 (83%), Positives = 34/36 (94%)
Frame = +3
Query: 258 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 365
SLL+ERLSVDYGKKSKL F +YP+PQVST+VVEPYN
Sbjct: 151 SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYN 186
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 167 bits (407), Expect = 2e-42
Identities = 76/85 (89%), Positives = 82/85 (96%)
Frame = +1
Query: 1 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 180
AVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK 124
Query: 181 LADQCTGLQGFLIFHSFGGGTGSGL 255
LAD CTGLQGFL+F++ GGGTGSGL
Sbjct: 125 LADNCTGLQGFLVFNAVGGGTGSGL 149
Score = 68.1 bits (159), Expect = 2e-12
Identities = 30/36 (83%), Positives = 34/36 (94%)
Frame = +3
Query: 258 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 365
SLL+ERLSVDYGKKSKL F +YP+PQVST+VVEPYN
Sbjct: 151 SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYN 186
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 167 bits (407), Expect = 2e-42
Identities = 76/85 (89%), Positives = 82/85 (96%)
Frame = +1
Query: 1 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 180
AVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK 124
Query: 181 LADQCTGLQGFLIFHSFGGGTGSGL 255
LAD CTGLQGFL+F++ GGGTGSGL
Sbjct: 125 LADNCTGLQGFLVFNAVGGGTGSGL 149
Score = 68.1 bits (159), Expect = 2e-12
Identities = 30/36 (83%), Positives = 34/36 (94%)
Frame = +3
Query: 258 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 365
SLL+ERLSVDYGKKSKL F +YP+PQVST+VVEPYN
Sbjct: 151 SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYN 186
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 167 bits (405), Expect = 4e-42
Identities = 74/85 (87%), Positives = 82/85 (96%)
Frame = +1
Query: 1 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 180
AVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVDL LDR+RK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRK 124
Query: 181 LADQCTGLQGFLIFHSFGGGTGSGL 255
LAD CTGLQGFL+F++ GGGTGSGL
Sbjct: 125 LADNCTGLQGFLVFNAVGGGTGSGL 149
Score = 69.7 bits (163), Expect = 8e-13
Identities = 32/36 (88%), Positives = 34/36 (94%)
Frame = +3
Query: 258 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 365
SLL+ERLSVDYGKKSKL F IYP+PQVSTAVVEPYN
Sbjct: 151 SLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYN 186
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 167 bits (405), Expect = 4e-42
Identities = 74/85 (87%), Positives = 82/85 (96%)
Frame = +1
Query: 1 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 180
AVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVDL LDR+RK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRK 124
Query: 181 LADQCTGLQGFLIFHSFGGGTGSGL 255
LAD CTGLQGFL+F++ GGGTGSGL
Sbjct: 125 LADNCTGLQGFLVFNAVGGGTGSGL 149
Score = 69.7 bits (163), Expect = 8e-13
Identities = 32/36 (88%), Positives = 34/36 (94%)
Frame = +3
Query: 258 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 365
SLL+ERLSVDYGKKSKL F IYP+PQVSTAVVEPYN
Sbjct: 151 SLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYN 186
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 160 bits (389), Expect = 3e-40
Identities = 70/85 (82%), Positives = 81/85 (95%)
Frame = +1
Query: 1 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 180
AVF+DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVD L+R+RK
Sbjct: 65 AVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLERLRK 124
Query: 181 LADQCTGLQGFLIFHSFGGGTGSGL 255
LAD CTGLQGFL+F++ GGGTGSGL
Sbjct: 125 LADNCTGLQGFLVFNAVGGGTGSGL 149
Score = 68.1 bits (159), Expect = 2e-12
Identities = 31/36 (86%), Positives = 34/36 (94%)
Frame = +3
Query: 258 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 365
SLL+ERLSVD+GKKSKL F IYP+PQVSTAVVEPYN
Sbjct: 151 SLLLERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYN 186
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 108 bits (260), Expect = 1e-24
Identities = 46/85 (54%), Positives = 61/85 (71%)
Frame = +1
Query: 1 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 180
A+ +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D VLD +RK
Sbjct: 63 AILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRK 122
Query: 181 LADQCTGLQGFLIFHSFGGGTGSGL 255
A+ C LQGF + HS GGGTGSG+
Sbjct: 123 EAENCDCLQGFQVCHSLGGGTGSGM 147
Score = 39.9 bits (89), Expect = 7e-04
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = +3
Query: 258 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 365
+LL+ ++ +Y + L F+++P+P+VS VVEPYN
Sbjct: 149 TLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYN 184
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 107 bits (256), Expect = 4e-24
Identities = 46/85 (54%), Positives = 61/85 (71%)
Frame = +1
Query: 1 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 180
AV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VLD +RK
Sbjct: 63 AVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK 122
Query: 181 LADQCTGLQGFLIFHSFGGGTGSGL 255
A+ C LQGF + HS GGGTGSG+
Sbjct: 123 EAENCDCLQGFQVCHSLGGGTGSGM 147
Score = 39.9 bits (89), Expect = 7e-04
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = +3
Query: 258 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 365
+LL+ ++ +Y + L F+++P+P+VS VVEPYN
Sbjct: 149 TLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYN 184
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 107 bits (256), Expect = 4e-24
Identities = 46/85 (54%), Positives = 61/85 (71%)
Frame = +1
Query: 1 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 180
AV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VLD +RK
Sbjct: 63 AVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK 122
Query: 181 LADQCTGLQGFLIFHSFGGGTGSGL 255
A+ C LQGF + HS GGGTGSG+
Sbjct: 123 EAENCDCLQGFQVCHSLGGGTGSGM 147
Score = 39.1 bits (87), Expect = 0.001
Identities = 14/36 (38%), Positives = 26/36 (72%)
Frame = +3
Query: 258 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 365
+LL+ ++ +Y + + F+++P+P+VS VVEPYN
Sbjct: 149 TLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYN 184
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 107 bits (256), Expect = 4e-24
Identities = 45/85 (52%), Positives = 61/85 (71%)
Frame = +1
Query: 1 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 180
AV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VLD +RK
Sbjct: 64 AVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRK 123
Query: 181 LADQCTGLQGFLIFHSFGGGTGSGL 255
A+ C LQGF + HS GGGTGSG+
Sbjct: 124 EAENCDCLQGFQVCHSLGGGTGSGM 148
Score = 39.9 bits (89), Expect = 7e-04
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = +3
Query: 258 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 365
+LL+ ++ +Y + L F+++P+P+VS VVEPYN
Sbjct: 150 TLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYN 185
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 105 bits (252), Expect = 1e-23
Identities = 44/85 (51%), Positives = 61/85 (71%)
Frame = +1
Query: 1 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 180
AV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD +RK
Sbjct: 64 AVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRK 123
Query: 181 LADQCTGLQGFLIFHSFGGGTGSGL 255
A+ C LQGF + HS GGGTGSG+
Sbjct: 124 EAENCDCLQGFQVCHSLGGGTGSGM 148
Score = 39.9 bits (89), Expect = 7e-04
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = +3
Query: 258 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 365
+LL+ ++ +Y + L F+++P+P+VS VVEPYN
Sbjct: 150 TLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYN 185
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 104 bits (250), Expect = 2e-23
Identities = 45/85 (52%), Positives = 60/85 (70%)
Frame = +1
Query: 1 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 180
AV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G E++D VLD +RK
Sbjct: 63 AVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK 122
Query: 181 LADQCTGLQGFLIFHSFGGGTGSGL 255
A+ C LQGF + HS GGGTGSG+
Sbjct: 123 EAENCDCLQGFQVCHSLGGGTGSGM 147
Score = 39.9 bits (89), Expect = 7e-04
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = +3
Query: 258 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 365
+LL+ ++ +Y + L F+++P+P+VS VVEPYN
Sbjct: 149 TLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYN 184
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 104 bits (250), Expect = 2e-23
Identities = 45/85 (52%), Positives = 60/85 (70%)
Frame = +1
Query: 1 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 180
AV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G E++D VLD +RK
Sbjct: 63 AVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK 122
Query: 181 LADQCTGLQGFLIFHSFGGGTGSGL 255
A+ C LQGF + HS GGGTGSG+
Sbjct: 123 EAENCDCLQGFQVCHSLGGGTGSGM 147
Score = 39.9 bits (89), Expect = 7e-04
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = +3
Query: 258 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 365
+LL+ ++ +Y + L F+++P+P+VS VVEPYN
Sbjct: 149 TLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYN 184
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 104 bits (249), Expect = 3e-23
Identities = 44/85 (51%), Positives = 61/85 (71%)
Frame = +1
Query: 1 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 180
AV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD +RK
Sbjct: 63 AVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK 122
Query: 181 LADQCTGLQGFLIFHSFGGGTGSGL 255
A+ C LQGF + HS GGGTGSG+
Sbjct: 123 EAENCDCLQGFQVCHSLGGGTGSGM 147
Score = 39.1 bits (87), Expect = 0.001
Identities = 14/36 (38%), Positives = 26/36 (72%)
Frame = +3
Query: 258 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 365
+LL+ ++ +Y + + F+++P+P+VS VVEPYN
Sbjct: 149 TLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYN 184
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 100 bits (239), Expect = 5e-22
Identities = 43/85 (50%), Positives = 60/85 (70%)
Frame = +1
Query: 1 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 180
AV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD +RK
Sbjct: 63 AVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK 122
Query: 181 LADQCTGLQGFLIFHSFGGGTGSGL 255
A+ LQGF + HS GGGTGSG+
Sbjct: 123 EAENSDCLQGFQVCHSLGGGTGSGM 147
Score = 39.1 bits (87), Expect = 0.001
Identities = 14/36 (38%), Positives = 26/36 (72%)
Frame = +3
Query: 258 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 365
+LL+ ++ +Y + + F+++P+P+VS VVEPYN
Sbjct: 149 TLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYN 184
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 71.3 bits (167), Expect = 2e-13
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Frame = +1
Query: 1 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED--AANNYARGHYTIGKEIVDLVLDRI 174
A+ +DLEP V++ ++ G YR L++ E + A NN+A G++ GK + + ++D I
Sbjct: 64 ALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYHQ-GKGVEEEIMDMI 122
Query: 175 RKLADQCTGLQGFLIFHSFGGGTGSGLLPY 264
+ AD L+GF++ HS GGTGSG+ Y
Sbjct: 123 DREADGSDSLEGFVLCHSIAGGTGSGMGSY 152
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 258 SLLMERLSVDYGKKSKLEFAIYP-APQVSTAVVEPYN 365
S L+E L+ Y KK ++++P + S VV+PYN
Sbjct: 151 SYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYN 187
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 70.9 bits (166), Expect = 3e-13
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Frame = +1
Query: 1 AVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED--AANNYARGHYTIGKEIVDLVLDRI 174
A+ +DLEP V++ ++ G YR L++ E + A NN+A G++ GK + + ++D I
Sbjct: 64 ALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYHQ-GKGVEEEIMDMI 122
Query: 175 RKLADQCTGLQGFLIFHSFGGGTGSGLLPY 264
+ AD L+GF++ HS GGTGSG+ Y
Sbjct: 123 DREADGSDSLEGFVLCHSIAGGTGSGMGSY 152
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 258 SLLMERLSVDYGKKSKLEFAIYP-APQVSTAVVEPYN 365
S L+E L+ Y KK ++++P + S VV+PYN
Sbjct: 151 SYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYN 187
>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
(Swiss-Prot:Q9H583) [Homo sapiens]
Length = 1830
Score = 29.9 bits (64), Expect = 0.75
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Frame = +3
Query: 234 WRYRLWVTSLLMERLSVDYGKKSKLE---FAIYPAPQVSTAVVEPYNFYSHHPHNP 392
W R V S L D G L+ F + P VS VVEP + HPH P
Sbjct: 1667 WHLRALVLSCLKNCFLHDTGSLKFLDTNNFQVLLKPIVSQLVVEPPSSLKEHPHVP 1722
>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; similar to Myosin heavy
chain, non-muscle (Zipper protein) (Myosin II)
(SP:Q99323) {Drosophila melanogaster} similar to EST
gb|T76116
Length = 1730
Score = 29.5 bits (63), Expect = 1.00
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 246 AGTSTEGVEDQESLQTGTLVSELADSVQNQIYD 148
+G TEGVED S LV D ++ QI D
Sbjct: 609 SGLMTEGVEDHTSSDINLLVDRSFDKIEKQIRD 641
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +3
Query: 210 IPDLPLLRWRYRLWVTSLLMERLSVDYGKKSKLEFA---IYPAPQVSTAVVEPYNFYSHH 380
I LP + + L T L E L+V+ +++ + ++PA + +++ Y+FY H
Sbjct: 576 IAKLPFIEEKLLLAATRKLEETLTVEEQQRNSVMLDLLYVHPAHPLGQRILQYYHFYQHM 635
Query: 381 P 383
P
Sbjct: 636 P 636
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 1287
Score = 28.3 bits (60), Expect = 2.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 282 VDYGKKSKLEFAIYPAPQVSTAVVEPYNFYSHH 380
+D+ + F P VS A V+PYN + H
Sbjct: 285 IDFSSARGISFKFESNPSVSPACVKPYNSFDSH 317
>At5g59380.1 68418.m07441 methyl-CpG-binding domain-containing
protein similar to testis specific methyl-CpG binding
protein MBD2 [Homo sapiens] GI:3800801; contains Pfam
profile PF01429: Methyl-CpG binding domain
Length = 225
Score = 27.9 bits (59), Expect = 3.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 251 PEPVPPPKEWKIRNPCRPVHWS 186
P P PPP ++ +NP V WS
Sbjct: 161 PPPPPPPLDFDFKNPPDKVSWS 182
>At4g10440.1 68417.m01716 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 633
Score = 27.5 bits (58), Expect = 4.0
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = -2
Query: 178 CGFCPKPNLRFPFQWCSDHGHSCWPHLPYQ 89
C P PN + PF+W ++ + ++P++
Sbjct: 136 CLIPPPPNYKIPFKWPQSRDYAWYDNIPHK 165
>At1g33170.1 68414.m04096 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 639
Score = 27.5 bits (58), Expect = 4.0
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = -2
Query: 178 CGFCPKPNLRFPFQWCSDHGHSCWPHLPYQ 89
C P PN + PF+W ++ + ++P++
Sbjct: 153 CLIPPPPNYKIPFKWPQSRDYAWYDNIPHK 182
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 27.1 bits (57), Expect = 5.3
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Frame = +1
Query: 67 FHPEQLITGKEDAANNYARGHYTIGKEIV------DLVLDRIRKLADQCTGLQGFLIFHS 228
+HP+ L ++ A +Y IGK++ + + DR+R ++C +QG
Sbjct: 160 YHPQSLYELNGLWMDSQAFNNYGIGKDVFSEASRGEEICDRLRFFVEECDHIQGIKFLVD 219
Query: 229 FGGG 240
GG
Sbjct: 220 DSGG 223
>At5g56020.1 68418.m06990 expressed protein
Length = 230
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -3
Query: 252 PRAGTSTEGVEDQESLQTGTLVSELAD 172
P +GTS+ G + Q+ LQTG S LAD
Sbjct: 10 PMSGTSSSGDQQQQPLQTGG-TSLLAD 35
>At1g64770.1 68414.m07344 expressed protein
Length = 348
Score = 26.6 bits (56), Expect = 7.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 190 GQRACGFCPKPNLRFPFQWCS 128
G + C +CP P L PF+ S
Sbjct: 197 GLKGCSYCPNPPLSSPFELLS 217
>At1g06470.2 68414.m00686 phosphate translocator-related low
similarity to SP|P52178 Triose phosphate/phosphate
translocator, non-green plastid, chloroplast precursor
(CTPT) {Brassica oleracea},
phosphoenolpyruvate/phosphate translocator precursor
[Mesembryanthemum crystallinum] GI:9295275
Length = 414
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 45 HWHIQTVVSSRTTYYW*GR 101
H+ IQ V+S T+YW GR
Sbjct: 114 HFSIQAVLSKMITWYWSGR 132
>At1g06470.1 68414.m00685 phosphate translocator-related low
similarity to SP|P52178 Triose phosphate/phosphate
translocator, non-green plastid, chloroplast precursor
(CTPT) {Brassica oleracea},
phosphoenolpyruvate/phosphate translocator precursor
[Mesembryanthemum crystallinum] GI:9295275
Length = 414
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 45 HWHIQTVVSSRTTYYW*GR 101
H+ IQ V+S T+YW GR
Sbjct: 114 HFSIQAVLSKMITWYWSGR 132
>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 480
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1
Query: 257 SNPEPVPPPKEWKIRN 210
S PEP PPKE KI+N
Sbjct: 179 SKPEPELPPKEPKIKN 194
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,576,286
Number of Sequences: 28952
Number of extensions: 207857
Number of successful extensions: 737
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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