Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1232
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0151 + 5947177-5947322,5947461-5947607,5947707-5947931,594...    29   2.9  
07_02_0019 + 11877119-11879984,11880316-11880389,11881293-118815...    29   3.8  
09_06_0228 + 21706118-21706252,21706327-21706406,21706742-217068...    28   6.7  
06_02_0011 - 10569471-10572245                                         28   6.7  

>03_02_0151 +
           5947177-5947322,5947461-5947607,5947707-5947931,
           5948036-5948213,5948328-5948595,5948684-5948786,
           5948882-5949006,5949091-5949169,5949250-5949394,
           5949500-5949660,5949750-5949870,5950081-5950275
          Length = 630

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 303 QENPESLLGPSTINTVMSSALNGVPTPLILWKPYQ 199
           +E P  LL P   + V+S   N  P P ++ KP Q
Sbjct: 124 EEKPAILLSPKEESVVLSKPTNAPPLPPVVLKPKQ 158


>07_02_0019 + 11877119-11879984,11880316-11880389,11881293-11881511,
            11881557-11881679,11881759-11881859,11881938-11881990,
            11882084-11882269,11882677-11882894
          Length = 1279

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 212  GNLIRGPRAQGHENALDMTI*ISKYSIFELIGIRILH 102
            GNLI+G R    ++ + + I   +Y I  L+GI ++H
Sbjct: 1141 GNLIKGLRKLEFKHTVIIAIVCIRYMILPLVGIAVVH 1177


>09_06_0228 +
           21706118-21706252,21706327-21706406,21706742-21706866,
           21706960-21707084,21707162-21707380,21707458-21707580,
           21707661-21707761,21707847-21707899,21707972-21708174
          Length = 387

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 212 GNLIRGPRAQGHENALDMTI*ISKYSIFELIGIRILH 102
           GNLI+G R    +  + + I   +Y I  L+GI ++H
Sbjct: 316 GNLIKGLRKSELKRTVIIAIVCIRYVILPLVGIAVVH 352


>06_02_0011 - 10569471-10572245
          Length = 924

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = -2

Query: 571 FSRLKTEPSTKTTVDLYISIYKHFDILN*---ILGFI*VPI*PIKAKTKHGLRTAGSILA 401
           F   K +P+T      Y+  YK F   N    +   + V +      +KHG+R+   I+ 
Sbjct: 229 FPPYKHQPATSVLRSNYLDRYKLFVSCNSTSFVASLVTVILLLSTELSKHGIRSKAVIVC 288

Query: 400 VVRDCQCL 377
           VV D  CL
Sbjct: 289 VVADLLCL 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,660,600
Number of Sequences: 37544
Number of extensions: 312498
Number of successful extensions: 472
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)